13626_YKL038W (Saccharomyces paradoxus)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 13626_YKL038W T390756_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RGT1
M00092_2.00 		Saccharomyces cerevisiae
CGGRDNWWHN
NDWWNHYCCG		 PBM
Badis et al.(2008)
RGT1_2131 		0.683 0.950
RGT1
M01585_2.00 		Saccharomyces cerevisiae
HCGGADNWWN
NWWNHTCCGD		 PBM
Zhu et al.(2009)
Rgt1 		0.683 0.950
RGT1
M07518_2.00 		Saccharomyces cerevisiae
NCGGADNAWHN
NDWTNHTCCGN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0367.1 		0.683 0.950
RGT1
M08673_2.00 		Saccharomyces cerevisiae
NDNNNYCGGAWWAAYHNNNN
NNNNDRTTWWTCCGRNNNHN		 Misc
DeBoer et al.(2011)
YKL038W_803 		0.683 0.950
RGT1
M11480_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RGT1_Q5 		0.683 0.950
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
13626_YKL038W Zinc cluster 45 86

Links

Other Zinc cluster family TFs
Other Saccharomyces paradoxus TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RGT1 Saccharomyces cerevisiae YKL038W D 0.683
SU7_2014 Saccharomyces arboricola SU7_2014 I 0.682
14629_YKL038W Saccharomyces bayanus 14629_YKL038W I 0.675
13522_YKL038W Saccharomyces mikatae 13522_YKL038W I 0.666
Kpol_1002p5 Vanderwaltozyma polyspora Kpol_1002p5 I 0.659
KNAG_0A07100 Kazachstania naganishii KNAG_0A07100 I 0.658
CAGL0L01903g Candida glabrata CAGL0L01903g I 0.600
AGOS_AGL083W Ashbya gossypii AGOS_AGL083W I 0.595
AACERI_AaceriAGL083W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGL083W I 0.595
ZYRO0E05676g Zygosaccharomyces rouxii ZYRO0E05676g I 0.592
ZBAI_08469 Zygosaccharomyces bailii ZBAI_08469 I 0.592
ZBAI_03469 Zygosaccharomyces bailii ZBAI_03469 I 0.592
NDAI_0K01800 Naumovozyma dairenensis NDAI_0K01800 I 0.588
NCAS_0A04750 Naumovozyma castellii NCAS_0A04750 I 0.587
Scas_Contig625.5 Saccharomyces castellii Scas_Contig625.5 I 0.587
TPHA_0C04280 Tetrapisispora phaffii TPHA_0C04280 I 0.586
SAKL0A09856g Lachancea kluyveri SAKL0A09856g I 0.583
TDEL_0B06360 Torulaspora delbrueckii TDEL_0B06360 I 0.559
KAFR_0B01450 Kazachstania africana KAFR_0B01450 I 0.557
Ecym_7239 Eremothecium cymbalariae Ecym_7239 I 0.549
DRE_01419 Drechslerella stenobrocha DRE_01419 I 0.544
KLTH0D07260g Kluyveromyces thermotolerans KLTH0D07260g I 0.543
KLTH0D07260g Lachancea thermotolerans KLTH0D07260g I 0.543