CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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15796_YLR278C
(
Saccharomyces paradoxus
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
15796_YLR278C
T390775_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YLR278C
M00099_2.00
Saccharomyces cerevisiae
NNNCGGVVNN
NNBBCCGNNN
PBM
Badis et al.(2008)
YLR278C_2147
0.683
1.000
YLR278C
M00926_2.00
Saccharomyces cerevisiae
NBCGGAGTTN
NAACTCCGVN
PBM
Gordan et al.(2011)
Ylr278c
0.683
1.000
YLR278C
M07525_2.00
Saccharomyces cerevisiae
NCGGAGWW
WWCTCCGN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0430.1
0.683
1.000
YLR278C
M08683_2.00
Saccharomyces cerevisiae
NCGGAGWW
WWCTCCGN
Misc
DeBoer et al.(2011)
YLR278C_589
0.683
1.000
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
15796_YLR278C
Zinc cluster
39
77
RSCLLCRRRKQRCDHKLPSCTACLKAGIKCVQPSKYSSS
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces paradoxus
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy