CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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17002_YLR228C
(
Saccharomyces bayanus
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
17002_YLR228C
T390787_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ECM22
M00096_2.00
Saccharomyces cerevisiae
NNCSGRDNHN
NDNHYCSGNN
PBM
Badis et al.(2008)
ECM22_2066
0.654
0.975
ECM22
M00924_2.00
Saccharomyces cerevisiae
NNDWACGRN
NYCGTWHNN
PBM
Gordan et al.(2011)
Ecm22
0.654
0.975
ECM22
M01589_2.00
Saccharomyces cerevisiae
NNNCGGVN
NBCCGNNN
PBM
Zhu et al.(2009)
Ecm22
0.654
0.975
ECM22
M07522_2.00
Saccharomyces cerevisiae
TCCGGAD
HTCCGGA
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0292.1
0.654
0.975
ECM22
M08679_2.00
Saccharomyces cerevisiae
NNYCGGRNNDMCGGAVNH
DNBTCCGKHNNYCCGRNN
Misc
DeBoer et al.(2011)
YLR228C_849
0.654
0.975
UPC2
M00920_2.00
Saccharomyces cerevisiae
NTCGTWYVN
NBRWACGAN
PBM
Gordan et al.(2011)
Upc2
0.571
0.700
UPC2
M07508_2.00
Saccharomyces cerevisiae
NRWACGA
TCGTWYN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0411.1
0.571
0.700
UPC2
M08654_2.00
Saccharomyces cerevisiae
NRWACGA
TCGTWYN
Misc
DeBoer et al.(2011)
YDR213W_544
0.571
0.700
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
17002_YLR228C
Zinc cluster
41
80
TGCDNCKRRRVKCDEGKPFCKKCTNMKLECVYSPIQPRRR
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces bayanus
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
23482_Multiple
Saccharomyces mikatae
23482_Multiple
I
0.654
15982_YLR228C
Saccharomyces paradoxus
15982_YLR228C
I
0.654
ECM22
Saccharomyces cerevisiae
YLR228C
D
0.654
KNAG_0A02550
Kazachstania naganishii
KNAG_0A02550
I
0.592
4515_Multiple
Saccharomyces bayanus
4515_Multiple
I
0.588
SU7_2615
Saccharomyces arboricola
SU7_2615
I
0.588
4123_Multiple
Saccharomyces mikatae
4123_Multiple
I
0.588
UPC2
Saccharomyces cerevisiae
YDR213W
D
0.571
4533_YDR213W
Saccharomyces paradoxus
4533_YDR213W
I
0.571
KAFR_0H01800
Kazachstania africana
KAFR_0H01800
I
0.562
NDAI_0C04840
Naumovozyma dairenensis
NDAI_0C04840
I
0.551
SAKL0H13024g
Lachancea kluyveri
SAKL0H13024g
I
0.546
NCAS_0C02730
Naumovozyma castellii
NCAS_0C02730
I
0.546
Scas_Contig679.26
Saccharomyces castellii
Scas_Contig679.26
I
0.546