21336_YPL248C (Saccharomyces mikatae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 21336_YPL248C T390815_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GAL4
M01599_2.00 		Saccharomyces cerevisiae
NYCGGVN
NBCCGRN		 PBM
Zhu et al.(2009)
Gal4 		0.683 1.000
GAL4
M07559_2.00 		Saccharomyces cerevisiae
GGANVRCW
WGYBNTCC		 ChIP-exo
Rhee et al.(2011)
Gal4_1 		0.683 1.000
GAL4
M07560_2.00 		Saccharomyces cerevisiae
GGRAAARGGTC
GACCYTTTYCC		 ChIP-exo
Rhee et al.(2011)
Gal4_2 		0.683 1.000
GAL4
M07561_2.00 		Saccharomyces cerevisiae
AGAACAA
TTGTTCT		 ChIP-exo
Rhee et al.(2011)
Gal4_3 		0.683 1.000
GAL4
M08698_2.00 		Saccharomyces cerevisiae
CGGVSNNVTNYNSNCCG
CGGNSNRNABNNSBCCG		 Misc
DeBoer et al.(2011)
YPL248C_1510 		0.683 1.000
GAL4
M11487_2.00 		Saccharomyces cerevisiae
BYWCGGWSVAVWGHBVBCCGDDV
BHHCGGVBVDCWBTBSWCCGWRV		 Transfac
Matys et al.(2006)
F$GAL4_01 		0.683 1.000
GAL4
M11488_2.00 		Saccharomyces cerevisiae
HKYWCGGHVVRVWGHBNBCCGD
HCGGVNVDCWBYBBDCCGWRMD		 Transfac
Matys et al.(2006)
F$GAL4_C 		0.683 1.000
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
21336_YPL248C Zinc cluster 22 60

Links

Other Zinc cluster family TFs
Other Saccharomyces mikatae TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
21920_YPL248C Saccharomyces paradoxus 21920_YPL248C I 0.683
GAL4 Saccharomyces cerevisiae YPL248C D 0.683
24374_YPL248C Saccharomyces bayanus 24374_YPL248C I 0.667
SU7_3455 Saccharomyces arboricola SU7_3455 I 0.660
SKUD_900401 Saccharomyces kudriavzevii SKUD_900401 I 0.646
NCAS_0G01100 Naumovozyma castellii NCAS_0G01100 I 0.629
Scas_Contig699.7 Saccharomyces castellii Scas_Contig699.7 I 0.629
TBLA_0G01800 Tetrapisispora blattae TBLA_0G01800 I 0.620
KAFR_0F01040 Kazachstania africana KAFR_0F01040 I 0.606
TPHA_0H01980 Tetrapisispora phaffii TPHA_0H01980 I 0.605
SAKL0A02860g Lachancea kluyveri SAKL0A02860g I 0.588
ZBAI_06699 Zygosaccharomyces bailii ZBAI_06699 I 0.580
ZBAI_04658 Zygosaccharomyces bailii ZBAI_04658 I 0.580
NDAI_0F01220 Naumovozyma dairenensis NDAI_0F01220 I 0.578
NDAI_0I00740 Naumovozyma dairenensis NDAI_0I00740 I 0.573
Scas_Contig720.58 Saccharomyces castellii Scas_Contig720.58 I 0.573
NCAS_0D04190 Naumovozyma castellii NCAS_0D04190 I 0.573
GNLVRS01_PISO0F02711g Millerozyma farinosa GNLVRS01_PISO0F02711g I 0.569
GNLVRS01_PISO0J02671g Millerozyma farinosa GNLVRS01_PISO0J02671g I 0.569
AWRI1499_3090 Brettanomyces bruxellensis AWRI1499_3090 I 0.565
KNAG_0D00690 Kazachstania naganishii KNAG_0D00690 I 0.541
XP_002490850.1 Pichia pastoris XP_002490850.1 I 0.540
PAS_FragB_0075 Komagataella pastoris PAS_FragB_0075 I 0.540
CLUG_00203 Clavispora lusitaniae CLUG_00203 I 0.540
DEHA2F03366g Debaryomyces hansenii DEHA2F03366g I 0.540
CLUG_00203 Candida lusitaniae CLUG_00203 I 0.540