21336_YPL248C (Saccharomyces mikatae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 21336_YPL248C T390815_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GAL4
M01599_2.00
Saccharomyces cerevisiae
NYCGGVN

NBCCGRN
PBM
Zhu et al.(2009)
Gal4
0.683 1.000
GAL4
M07559_2.00
Saccharomyces cerevisiae
GGANVRCW

WGYBNTCC
ChIP-exo
Rhee et al.(2011)
Gal4_1
0.683 1.000
GAL4
M07560_2.00
Saccharomyces cerevisiae
GGRAAARGGTC

GACCYTTTYCC
ChIP-exo
Rhee et al.(2011)
Gal4_2
0.683 1.000
GAL4
M07561_2.00
Saccharomyces cerevisiae
AGAACAA

TTGTTCT
ChIP-exo
Rhee et al.(2011)
Gal4_3
0.683 1.000
GAL4
M08698_2.00
Saccharomyces cerevisiae
CGGVSNNVTNYNSNCCG

CGGNSNRNABNNSBCCG
Misc
DeBoer et al.(2011)
YPL248C_1510
0.683 1.000
GAL4
M11487_2.00
Saccharomyces cerevisiae
BYWCGGWSVAVWGHBVBCCGDDV

BHHCGGVBVDCWBTBSWCCGWRV
Transfac
Matys et al.(2006)
F$GAL4_01
0.683 1.000
GAL4
M11488_2.00
Saccharomyces cerevisiae
HKYWCGGHVVRVWGHBNBCCGD

HCGGVNVDCWBYBBDCCGWRMD
Transfac
Matys et al.(2006)
F$GAL4_C
0.683 1.000
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
21336_YPL248C Zinc cluster 22 60

Links

Other Zinc cluster family TFs
Other Saccharomyces mikatae TFs

Invalid Input OrderBy

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action