CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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24374_YPL248C
(
Saccharomyces bayanus
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
24374_YPL248C
T390839_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GAL4
M01599_2.00
Saccharomyces cerevisiae
NYCGGVN
NBCCGRN
PBM
Zhu et al.(2009)
Gal4
0.667
0.949
GAL4
M07559_2.00
Saccharomyces cerevisiae
GGANVRCW
WGYBNTCC
ChIP-exo
Rhee et al.(2011)
Gal4_1
0.667
0.949
GAL4
M07560_2.00
Saccharomyces cerevisiae
GGRAAARGGTC
GACCYTTTYCC
ChIP-exo
Rhee et al.(2011)
Gal4_2
0.667
0.949
GAL4
M07561_2.00
Saccharomyces cerevisiae
AGAACAA
TTGTTCT
ChIP-exo
Rhee et al.(2011)
Gal4_3
0.667
0.949
GAL4
M08698_2.00
Saccharomyces cerevisiae
CGGVSNNVTNYNSNCCG
CGGNSNRNABNNSBCCG
Misc
DeBoer et al.(2011)
YPL248C_1510
0.667
0.949
GAL4
M11487_2.00
Saccharomyces cerevisiae
BYWCGGWSVAVWGHBVBCCGDDV
BHHCGGVBVDCWBTBSWCCGWRV
Transfac
Matys et al.(2006)
F$GAL4_01
0.667
0.949
GAL4
M11488_2.00
Saccharomyces cerevisiae
HKYWCGGHVVRVWGHBNBCCGD
HCGGVNVDCWBYBBDCCGWRMD
Transfac
Matys et al.(2006)
F$GAL4_C
0.667
0.949
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
24374_YPL248C
Zinc cluster
9
47
QACDICRLKKLKCSKEKPKCSKCLKNNWECCYSPKTKRS
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces bayanus
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
21336_YPL248C
Saccharomyces mikatae
21336_YPL248C
I
0.667
GAL4
Saccharomyces cerevisiae
YPL248C
D
0.667
21920_YPL248C
Saccharomyces paradoxus
21920_YPL248C
I
0.667
SU7_3455
Saccharomyces arboricola
SU7_3455
I
0.643
SKUD_900401
Saccharomyces kudriavzevii
SKUD_900401
I
0.629
NCAS_0G01100
Naumovozyma castellii
NCAS_0G01100
I
0.612
Scas_Contig699.7
Saccharomyces castellii
Scas_Contig699.7
I
0.612
KAFR_0F01040
Kazachstania africana
KAFR_0F01040
I
0.606
SAKL0A02860g
Lachancea kluyveri
SAKL0A02860g
I
0.605
TBLA_0G01800
Tetrapisispora blattae
TBLA_0G01800
I
0.603
Scas_Contig720.58
Saccharomyces castellii
Scas_Contig720.58
I
0.589
NCAS_0D04190
Naumovozyma castellii
NCAS_0D04190
I
0.589
TPHA_0H01980
Tetrapisispora phaffii
TPHA_0H01980
I
0.588
GNLVRS01_PISO0J02671g
Millerozyma farinosa
GNLVRS01_PISO0J02671g
I
0.586
GNLVRS01_PISO0F02711g
Millerozyma farinosa
GNLVRS01_PISO0F02711g
I
0.586
AWRI1499_3090
Brettanomyces bruxellensis
AWRI1499_3090
I
0.581
NDAI_0I00740
Naumovozyma dairenensis
NDAI_0I00740
I
0.573
ZBAI_06699
Zygosaccharomyces bailii
ZBAI_06699
I
0.563
ZBAI_04658
Zygosaccharomyces bailii
ZBAI_04658
I
0.563
NDAI_0F01220
Naumovozyma dairenensis
NDAI_0F01220
I
0.561
XP_002490850.1
Pichia pastoris
XP_002490850.1
I
0.557
CLUG_00203
Clavispora lusitaniae
CLUG_00203
I
0.557
DEHA2F03366g
Debaryomyces hansenii
DEHA2F03366g
I
0.557
CLUG_00203
Candida lusitaniae
CLUG_00203
I
0.557
PAS_FragB_0075
Komagataella pastoris
PAS_FragB_0075
I
0.557
CANTEDRAFT_103981
Candida tenuis
CANTEDRAFT_103981
I
0.550
CaO19.5338
Candida albicans
CaO19.5338
N
0.549
CaO19.12798
Candida albicans
CaO19.12798
N
0.549
CPAG_02485
Candida parapsilosis
CPAG_02485
N
0.549
CORT_0C07270
Candida orthopsilosis
CORT_0C07270
N
0.549
JL09_g5364
Pichia kudriavzevii
JL09_g5364
N
0.549
CD36_24740
Candida dubliniensis
CD36_24740
N
0.549
LELG_02329
Lodderomyces elongisporus
LELG_02329
N
0.549
G210_5810
Candida maltosa
G210_5810
N
0.549
KNAG_0D00690
Kazachstania naganishii
KNAG_0D00690
I
0.541