CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PMAA_023940
(
Penicillium marneffei
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
PMAA_023940
T391998_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU00155
M02583_2.00
Neurospora crassa
NNCGGNNNN
NNNNCCGNN
PBM
Weirauch et al.(2014)
pTH8610
0.622
0.895
ASG1
M00088_2.00
Saccharomyces cerevisiae
CGGRDNN
NNHYCCG
PBM
Badis et al.(2008)
ASG1_2140
0.573
0.737
ASG1
M01581_2.00
Saccharomyces cerevisiae
NCGGNDNN
NNHNCCGN
PBM
Zhu et al.(2009)
Asg1
0.573
0.737
ASG1
M07515_2.00
Saccharomyces cerevisiae
CCGGAW
WTCCGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0275.1
0.573
0.737
ASG1
M08666_2.00
Saccharomyces cerevisiae
CCGGAW
WTCCGG
Misc
DeBoer et al.(2011)
YIL130W_529
0.573
0.737
ASG1
M08667_2.00
Saccharomyces cerevisiae
CCGGVWMHMDBCCGGD
HCCGGVHKDKWBCCGG
Misc
DeBoer et al.(2011)
YIL130W_807
0.573
0.737
NCU01478
M02590_2.00
Neurospora crassa
NNCGGVNNN
NNNBCCGNN
PBM
Weirauch et al.(2014)
pTH8961
0.550
0.605
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PMAA_023940.t1
Zinc cluster
69
106
RACDECRRKKIKCDGKQPCTHCTVYSYDCTYDQPSNRR
Links
Other
Zinc cluster
family TFs
Other
Penicillium marneffei
TFs
182 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy