XP_002491690.1 (Pichia pastoris)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 XP_002491690.1 T392305_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CAT8
M00102_2.00
Saccharomyces cerevisiae
NNNCCGGAN

NTCCGGNNN
PBM
Badis et al.(2008)
CAT8_4532
0.667 0.923
CAT8
M07529_2.00
Saccharomyces cerevisiae
CCGGRN

NYCCGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0280.1
0.667 0.923
CAT8
M08688_2.00
Saccharomyces cerevisiae
NCGGNNNDVNGGNN

NNCCNBHNNNCCGN
Misc
DeBoer et al.(2011)
YMR280C_33
0.667 0.923
CAT8
M11485_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CAT8_Q6_01
0.667 0.923
CAT8
M11486_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CAT8_Q6
0.667 0.923
acu-15
M02616_2.00
Neurospora crassa
NNCGGVNNNN

NNNNBCCGNN
PBM
Weirauch et al.(2014)
pTH7801
0.595 0.718
acu-15
M02617_2.00
Neurospora crassa
NNCGGVNNNN

NNNNBCCGNN
PBM
Weirauch et al.(2014)
pTH8900
0.595 0.718
FGRRES_09921
M02577_2.00
Fusarium graminearum
NNCGGVNNNN

NNNNBCCGNN
PBM
Weirauch et al.(2014)
pTH7794
0.595 0.692
ANIA_00689
M11469_2.00
Aspergillus nidulans Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$FACBALL_Q2
0.578 0.692
ANIA_00689
M11470_2.00
Aspergillus nidulans Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$FACBCA_Q2
0.578 0.692
ANIA_00689
M11471_2.00
Aspergillus nidulans Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$FACBCB_Q2
0.578 0.692
SIP4
M00089_2.00
Saccharomyces cerevisiae
NNNNNNCSGN

NCSGNNNNNN
PBM
Badis et al.(2008)
SIP4_2067
0.562 0.667
SIP4
M01582_2.00
Saccharomyces cerevisiae
NNNNNNNVVD

HBBNNNNNNN
PBM
Zhu et al.(2009)
Sip4
0.562 0.667
SIP4
M07516_2.00
Saccharomyces cerevisiae
YYCGGRR

YYCCGRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0380.1
0.562 0.667
SIP4
M08669_2.00
Saccharomyces cerevisiae
NCGGNYNVMYSGR

YCSRKBNRNCCGN
Misc
DeBoer et al.(2011)
YJL089W_2067
0.562 0.667
SIP4
M08670_2.00
Saccharomyces cerevisiae
YYCGGRR

YYCCGRR
Misc
DeBoer et al.(2011)
YJL089W_573
0.562 0.667
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002491690.1 Zinc cluster 34 73

Links

Other Zinc cluster family TFs
Other Pichia pastoris TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
YGR067C Saccharomyces cerevisiae YGR067C D 0.000
AACERI_AaceriAFR580C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFR580C I 0.000
SAKL0H04070g Lachancea kluyveri SAKL0H04070g I 0.000
8484_Multiple Saccharomyces mikatae 8484_Multiple I 0.000
8169_YGR067C Saccharomyces paradoxus 8169_YGR067C I 0.000
SPAPADRAFT_52462 Spathaspora passalidarum SPAPADRAFT_52462 I 0.000
PAS_chr3_0259 Komagataella pastoris PAS_chr3_0259 I 0.000
KUCA_T00003077001 Kuraishia capsulata KUCA_T00003077001 I 0.000
Kpol_472p10 Vanderwaltozyma polyspora Kpol_472p10 I 0.000
KNAG_0D04190 Kazachstania naganishii KNAG_0D04190 I 0.000
AGOS_AFR580C Ashbya gossypii AGOS_AFR580C I 0.000
BN7_2468 Wickerhamomyces ciferrii BN7_2468 I 0.000
CAGL0K04631g Candida glabrata CAGL0K04631g I 0.000
XP_002492475.1 Pichia pastoris XP_002492475.1 I 0.000
CORT_0F03430 Candida orthopsilosis CORT_0F03430 I 0.000
Ecym_2760 Eremothecium cymbalariae Ecym_2760 I 0.000
HPODL_04127 Ogataea parapolymorpha HPODL_04127 I 0.000
KLLA0_B07909g Kluyveromyces lactis KLLA0_B07909g I 0.000
ZBAI_02568 Zygosaccharomyces bailii ZBAI_02568 N 0.000
ZYRO0B07568g Zygosaccharomyces rouxii ZYRO0B07568g N 0.000
ZBAI_06964 Zygosaccharomyces bailii ZBAI_06964 N 0.000