CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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XP_002491690.1
(
Pichia pastoris
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
XP_002491690.1
T392305_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CAT8
M00102_2.00
Saccharomyces cerevisiae
NNNCCGGAN
NTCCGGNNN
PBM
Badis et al.(2008)
CAT8_4532
0.667
0.923
CAT8
M07529_2.00
Saccharomyces cerevisiae
CCGGRN
NYCCGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0280.1
0.667
0.923
CAT8
M08688_2.00
Saccharomyces cerevisiae
NCGGNNNDVNGGNN
NNCCNBHNNNCCGN
Misc
DeBoer et al.(2011)
YMR280C_33
0.667
0.923
CAT8
M11485_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CAT8_Q6_01
0.667
0.923
CAT8
M11486_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CAT8_Q6
0.667
0.923
acu-15
M02616_2.00
Neurospora crassa
NNCGGVNNNN
NNNNBCCGNN
PBM
Weirauch et al.(2014)
pTH7801
0.595
0.718
acu-15
M02617_2.00
Neurospora crassa
NNCGGVNNNN
NNNNBCCGNN
PBM
Weirauch et al.(2014)
pTH8900
0.595
0.718
FGRRES_09921
M02577_2.00
Fusarium graminearum
NNCGGVNNNN
NNNNBCCGNN
PBM
Weirauch et al.(2014)
pTH7794
0.595
0.692
ANIA_00689
M11469_2.00
Aspergillus nidulans
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$FACBALL_Q2
0.578
0.692
ANIA_00689
M11470_2.00
Aspergillus nidulans
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$FACBCA_Q2
0.578
0.692
ANIA_00689
M11471_2.00
Aspergillus nidulans
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$FACBCB_Q2
0.578
0.692
SIP4
M00089_2.00
Saccharomyces cerevisiae
NNNNNNCSGN
NCSGNNNNNN
PBM
Badis et al.(2008)
SIP4_2067
0.562
0.667
SIP4
M01582_2.00
Saccharomyces cerevisiae
NNNNNNNVVD
HBBNNNNNNN
PBM
Zhu et al.(2009)
Sip4
0.562
0.667
SIP4
M07516_2.00
Saccharomyces cerevisiae
YYCGGRR
YYCCGRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0380.1
0.562
0.667
SIP4
M08669_2.00
Saccharomyces cerevisiae
NCGGNYNVMYSGR
YCSRKBNRNCCGN
Misc
DeBoer et al.(2011)
YJL089W_2067
0.562
0.667
SIP4
M08670_2.00
Saccharomyces cerevisiae
YYCGGRR
YYCCGRR
Misc
DeBoer et al.(2011)
YJL089W_573
0.562
0.667
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002491690.1
Zinc cluster
34
73
QACDRCRSKKTRCDGKRPQCSQCAAVGFECKISDKLSRRA
Links
Other
Zinc cluster
family TFs
Other
Pichia pastoris
TFs
243 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy