Cis-BP

CisBP Links


Other TF DNA binding motif databases
FactorBook - Human Motifs derived from ENCODE ChIP-seq experiments
Fly Factor Survey - Fly TF motifs derived from Bacterial one-hybrid (B1H) experiments
hmCHIP - Human and Mouse motifs derived from ChIP-seq experiments
HOCOMOCO - Human motifs collected and curated from various sources
JASPAR - Motifs collected and curated from various sources
Transfac - Motifs collected and curated from various sources
UniProbe - PBM motifs and data


Publications from which data was taken (First author/Year/PMID/Description):
Badis et al. 2008 (19111667): Yeast TFs (PBMs)
Badis et al. 2009 (19443739): Mouse TFs (PBMs)
Berger et al. 2006 (16998473): Original universal PBM study (PBMs)
Berger et al. 2008 (18585359): Mouse Homeodomains (PBMs)
Boyle et al. 2014 (25164757): modENCODE motifs (ChIP-seq)
Campbell et al. 2010 (21060817): Plasmodium falciparum AP2 family TFs (PBMs)
Chang et al. 2013 (23795294): Arabidopsis thaliana and Physcomitrella patens TFs (PBMs)
Chen et al. 2011 (21450710): hmCHIP database (ChIP-seq)
DeBoer et al. 2011 (22102575): S. cerevisiae TF database (various)
DeSilva et al. 2008 (18541913): Protist AP2 family TFs (PBMs)
Gerstein et al. 2012 (22955619): ENCODE consortium human TFs (ChIP-seq)
Grove et al. 2009 (19632181): Worm bHLH TFs (PBMs)
Jolma et al. 2013 (23332764): Many human and mouse TFs (HT-SELEX)
Kulakovskiy et al. 2013 (23175603): HOCOMOCO database (various)
Lam et. al. 2011 (21321018): C2H2 zinc finger constructs (PBMs)
Lesch et al. 2009 (19204119): nsy-7 C. elegans TF (PBM)
Mathelier et al. 2014 (24194598): JASPAR database (various)
Matys et al. 2006 (16381825): Transfac database (various)
Narasimhan et al. 2015 (PMID coming soon): 129 C. elegans TFs (PBM)
Scharer et al. 2009 (19147588): SOX4 human TF (PBM)
SebePedros et al. 2013 (24043797): T-box family TFs (PBM)
Wei et al. 2010 (20517297): Ets family TFs (human and mouse) (PBMs)
Weirauch et al. 2013 (23354101): .DREAM challenge paper (mouse TFs) (PBMs)
Weirauch et al. 2014 (In press): TFs across eukaryotes (PBMs)
Zhu et al. 2009 (19158363): Yeast TFs (PBMs)
Zhu et al. 2011 (21097781): Fly TFs (B1H)