CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

Family Name	Num Motifs	Total Direct	Total Inferred	Total TFs	Pct TFs	PFam ID
C2H2 ZF	19715	910	18805	81123	24.3	zf-C2H2
Zinc cluster	5938	219	5719	35092	16.9	Zn_clus
Homeodomain	27728	660	27068	33601	82.5	Homeobox
Myb	13046	232	12814	26299	49.6	Myb_DNA-binding
bHLH	10721	283	10438	25639	41.8	HLH
bZIP	8230	278	7952	19511	42.2	bZIP_1
Sox	5540	88	5452	11290	49.1	HMG_box
AP2	7454	176	7278	10098	73.8	AP2
Nuclear receptor	6662	160	6502	9797	68.0	zf-C4
NAC/NAM	3547	74	3473	7618	46.6	NAM
Forkhead	4844	115	4729	7008	69.1	Forkhead
MADS box	4275	121	4154	6999	61.1	SRF-TF
GATA	3347	78	3269	6553	51.1	GATA
B3	1565	17	1548	6172	25.4	B3
WRKY	4675	52	4623	5410	86.4	WRKY
MADF	995	54	941	5173	19.2	MADF_DNA_bdg
BED ZF	119	5	114	4572	2.6	zf-BED
HSF	2766	29	2737	4282	64.6	HSF_DNA-bind
mTERF	41	2	39	3626	1.1	mTERF
GRAS	29	1	28	3585	0.8	GRAS
Ets	3247	64	3183	3472	93.5	Ets
FAR1	59	2	57	3368	1.8	FAR1
THAP finger	192	11	181	2984	6.4	THAP
T-box	1334	43	1291	2855	46.7	T-box
ARID/BRIGHT	930	21	909	2749	33.8	ARID
LOB	1266	11	1255	2658	47.6	DUF260
APSES	799	12	787	2421	33.0	KilA-N
E2F	2004	34	1970	2210	90.7	E2F_TDP
Pipsqueak	318	19	299	2169	14.7	HTH_psq
Dof	2023	50	1973	2103	96.2	zf-Dof
MBD	201	6	195	2071	9.7	MBD
CENPB	250	8	242	2024	12.4	CENP-B_N
FLYWCH	0	0	0	2009	0.0	FLYWCH
CSD	653	8	645	1738	37.6	CSD
SMAD	1189	23	1166	1648	72.1	MH1
Paired box	728	16	712	1630	44.7	PAX
TBP	808	3	805	1585	51.0	TBP
TCP	1342	42	1300	1493	89.9	TCP
RWP-RK	509	3	506	1474	34.5	RWP-RK
SBP	910	21	889	1369	66.5	SBP
RFX	1064	24	1040	1307	81.4	RFX_DNA_binding
DM	850	31	819	1264	67.2	DM
CBF/NF-Y	677	3	674	1226	55.2	CBFB_NFYA
TCR/CxC	1214	22	1192	1214	100.0	TCR
WRC	372	3	369	1167	31.9	WRC
CxxC	774	19	755	1137	68.1	zf-CXXC
AT hook	1072	36	1036	1075	99.7	AT_hook
PLATZ	26	1	25	1044	2.5	PLATZ
Storekeeper	121	8	113	1042	11.6	DUF573
Rel	697	27	670	1013	68.8	RHD_DNA_bind
Grainyhead	411	10	401	975	42.2	CP2
AP-2	454	9	445	928	48.9	TF_AP-2
C2HC ZF	65	1	64	869	7.5	zf-C2HC
NFX	15	2	13	821	1.8	zf-NF-X1
TEA	257	11	246	820	31.3	TEA
SAND	336	22	314	814	41.3	SAND
Ndt80/PhoG	128	5	123	777	16.5	NDT80_PhoG
IRF	566	25	541	775	73.0	IRF
CUT+Homeodomain	605	13	592	774	78.2	CUT,Homeobox
STAT	356	15	341	751	47.4	STAT_bind
CG-1	272	5	267	679	40.1	CG-1
Sigma 70	0	0	0	594	0.0	Sigma70_r2
Runt	452	9	443	590	76.6	Runt
CSL	223	4	219	551	40.5	LAG1-DNAbind
Copper fist	84	4	80	542	15.5	Copper-fist
EBF1	433	8	425	537	80.6	COE1_DBD
GCR1	65	4	61	503	12.9	GCR1_C
Brinker	43	5	38	469	9.2	BrkDBD
EIN3	252	6	246	451	55.9	EIN3
BBR	60	3	57	442	13.6	GAGA_bind
p53	182	6	176	432	42.1	P53
Prospero	229	2	227	422	54.3	HPD
CUT	29	1	28	364	8.0	CUT
GCM	252	11	241	343	73.5	GCM
GTF2I-like	101	2	99	240	42.1	GTF2I
Unknown	151	151	0	229	65.9	UNKNOWN
S1FA	75	1	74	214	35.0	S1FA
Whirly	0	0	0	198	0.0	Whirly
POU	34	1	33	164	20.7	Pou
MATalpha_HMGbox	9	1	8	152	5.9	MATalpha_HMGbox
Leafy	72	1	71	150	48.0	FLO_LFY
AFT	10	2	8	148	6.8	AFT
ABF1	3	2	1	146	2.1	BAF1_ABF1
STE	56	1	55	141	39.7	STE
IBD	6	3	3	135	4.4	IBD
Rap1	9	3	6	126	7.1	Rap1-DNA-bind
VHR1	38	3	35	74	51.4	Vhr1
ICP4	1	0	1	24	4.2	Herpes_ICP4_N
MADF+Myb	0	0	0	17	0.0	MADF_DNA_bdg,Myb_DNA-binding
CCCH ZF	3	3	0	5	60.0	zf-CCCH
RRM	1	1	0	1	100.0	RRM_1