CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Source
Type
Author
Year
PMID
Num TFs
Pct TFs
FlyFactorSurvey
B1H
Zhu
2011
21097781
297
0.1
Rhee2011
ChIP-exo
Rhee
2011
22153082
5
0
ENCODE
ChIP-seq
Gerstein
2012
22955619
67
0
hmCHIP
ChIP-seq
Chen
2011
21450710
17
0
modENCODE
ChIP-seq
Contrino
2012
22080565
35
0
Najafabadi2015b
ChIP-seq
Najafabadi
2015b
25690854
39
0
Schmitges2016
ChIP-seq
Schmitges
2016
27852650
131
0
Barazandeh2018
ChIP-seq_a
Barazandeh
2018
29146583
221
0.1
OMalley2016
Dap-seq
OMalley
2016
27203113
534
0.1
JASPAR
JASPAR
Mathelier
2014
24194598
486
0.1
DeBoer11
Misc
DeBoer
2011
22102575
198
0.1
HocoMoco
Misc
Kulakovskiy
2013
23175603
747
0.2
HOMER
Misc
Heinz
2010
20513432
187
0
iDMMPMM
Misc
Kulakovskiy
2009
20067172
39
0
Badis08
PBM
Badis
2008
19111667
110
0
Badis09
PBM
Badis
2009
19443739
105
0
Barrera2016
PBM
Barrera
2016
27013732
41
0
Berger06
PBM
Berger
2006
16998473
5
0
Berger08
PBM
Berger
2008
18585359
169
0
BusserPNAS2012
PBM
Busser
2012b
23184988
1
0
Campbell10
PBM
Campbell
2010
21060817
17
0
CEPD
PBM
Narasimhan
2015
25905672
129
0
Chang2013
PBM
Chang
2013
23795294
16
0
CheatleJarvela2014
PBM
Cheatle-Jarvela
2014
25016582
2
0
DelBianco2010
PBM
DelBianco
2010
21124806
1
0
DeMasi2011
PBM
DeMasi
2011
21335608
1
0
DeSilva08
PBM
DeSilva
2008
18541913
3
0
Gordan2011
PBM
Gordan
2011
22189060
26
0
Grove09
PBM
Grove
2009
19632181
10
0
Guo2014
PBM
Guo
2014
25287278
1
0
Lam11
PBM
Lam
2011
21321018
23
0
LehtiShiu2015
PBM
LehtiShiu
2015
26103993
4
0
Lesch09
PBM
Lesch
2009
19204119
1
0
Li2017
PBM
Li
2017
28869966
2
0
Lindemose2014
PBM
Lindemose
2014
24914054
14
0
Liu2018
PBM
Liu
2018
29606353
2
0
Mann2013
PBM
Mann
2013
23590861
7
0
Nakagawa2013
PBM
Nakagawa
2013
23836653
20
0
Peterson2012
PBM
Peterson
2012
23249739
3
0
Radke2013
PBM
Radke
2013
23572590
1
0
Scharer09
PBM
Scharer
2009
19147588
1
0
SebePedros2013
PBM
SebePedros
2013
24043797
4
0
Siggers2014
PBM
Siggers
2014
25042805
12
0
Soruco2013
PBM
Soruco
2013
23873939
1
0
Wei10
PBM
Wei
2010
20517297
21
0
Yin2017b
PBM
Yin
2017b
28473536
8
0
Zhu09
PBM
Zhu
2009
19158363
89
0
Zta
PBM
Tillo
2017
29072898
2
0
Hallikas2006
SELEX
Hallikas
2006
16413481
6
0
Jolma2010
SELEX
Jolma
2010
20378718
19
0
Jolma2013
SELEX
Jolma
2013
23332764
452
0.1
Ming2013
SELEX
Ming
2013
24418439
1
0
Nitta2015
SELEX
Nitta
2015
25779349
248
0.1
Yin2017
SELEX
Yin
2017
28473536
541
0.1
Isakova2017
SMiLE-seq
Isakova
2017
28092692
63
0
Transfac
Transfac
Matys
2006
16381825
958
0.2