CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Source
Type
Author
Year
PMID
Num TFs
Pct TFs
Transfac
Transfac
Matys
2006
16381825
958
0.2
Hallikas2006
SELEX
Hallikas
2006
16413481
6
0
Berger06
PBM
Berger
2006
16998473
5
0
DeSilva08
PBM
DeSilva
2008
18541913
3
0
Berger08
PBM
Berger
2008
18585359
169
0
Badis08
PBM
Badis
2008
19111667
110
0
Scharer09
PBM
Scharer
2009
19147588
1
0
Zhu09
PBM
Zhu
2009
19158363
89
0
Lesch09
PBM
Lesch
2009
19204119
1
0
Badis09
PBM
Badis
2009
19443739
105
0
Grove09
PBM
Grove
2009
19632181
10
0
iDMMPMM
Misc
Kulakovskiy
2009
20067172
39
0
Jolma2010
SELEX
Jolma
2010
20378718
19
0
HOMER
Misc
Heinz
2010
20513432
187
0
Wei10
PBM
Wei
2010
20517297
21
0
Campbell10
PBM
Campbell
2010
21060817
17
0
FlyFactorSurvey
B1H
Zhu
2011
21097781
297
0.1
DelBianco2010
PBM
DelBianco
2010
21124806
1
0
Lam11
PBM
Lam
2011
21321018
23
0
DeMasi2011
PBM
DeMasi
2011
21335608
1
0
hmCHIP
ChIP-seq
Chen
2011
21450710
17
0
modENCODE
ChIP-seq
Contrino
2012
22080565
35
0
DeBoer11
Misc
DeBoer
2011
22102575
198
0.1
Rhee2011
ChIP-exo
Rhee
2011
22153082
5
0
Gordan2011
PBM
Gordan
2011
22189060
26
0
ENCODE
ChIP-seq
Gerstein
2012
22955619
67
0
HocoMoco
Misc
Kulakovskiy
2013
23175603
747
0.2
BusserPNAS2012
PBM
Busser
2012b
23184988
1
0
Peterson2012
PBM
Peterson
2012
23249739
3
0
Jolma2013
SELEX
Jolma
2013
23332764
452
0.1
Radke2013
PBM
Radke
2013
23572590
1
0
Mann2013
PBM
Mann
2013
23590861
7
0
Chang2013
PBM
Chang
2013
23795294
16
0
Nakagawa2013
PBM
Nakagawa
2013
23836653
20
0
Soruco2013
PBM
Soruco
2013
23873939
1
0
SebePedros2013
PBM
SebePedros
2013
24043797
4
0
JASPAR
JASPAR
Mathelier
2014
24194598
486
0.1
Ming2013
SELEX
Ming
2013
24418439
1
0
Lindemose2014
PBM
Lindemose
2014
24914054
14
0
CheatleJarvela2014
PBM
Cheatle-Jarvela
2014
25016582
2
0
Siggers2014
PBM
Siggers
2014
25042805
12
0
Guo2014
PBM
Guo
2014
25287278
1
0
Najafabadi2015b
ChIP-seq
Najafabadi
2015b
25690854
39
0
Nitta2015
SELEX
Nitta
2015
25779349
248
0.1
CEPD
PBM
Narasimhan
2015
25905672
129
0
LehtiShiu2015
PBM
LehtiShiu
2015
26103993
4
0
Barrera2016
PBM
Barrera
2016
27013732
41
0
OMalley2016
Dap-seq
OMalley
2016
27203113
534
0.1
Schmitges2016
ChIP-seq
Schmitges
2016
27852650
131
0
Isakova2017
SMiLE-seq
Isakova
2017
28092692
63
0
Yin2017b
PBM
Yin
2017b
28473536
8
0
Yin2017
SELEX
Yin
2017
28473536
541
0.1
Li2017
PBM
Li
2017
28869966
2
0
Zta
PBM
Tillo
2017
29072898
2
0
Barazandeh2018
ChIP-seq_a
Barazandeh
2018
29146583
221
0.1
Liu2018
PBM
Liu
2018
29606353
2
0