Bra011529 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra011529 T001065_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.848 1.000
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.848 1.000
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.848 1.000
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.760 0.837
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.760 0.837
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.731 0.796
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.731 0.796
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.723 0.796
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.723 0.796
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.722 0.816
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.713 0.776
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.713 0.776
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.713 0.776
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.709 0.755
ERF14
M01045_2.00 		Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN		 PBM
Sullivan et al.(2014)
pTH9793 		0.703 0.755
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.691 0.735
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.691 0.735
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.691 0.735
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.688 0.714
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.677 0.755
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra011529.1-P AP2 135 186

Links

Other AP2 family TFs
Other Brassica rapa TFs

626 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30054.m000786 Ricinus communis 30054.m000786 I 0.000
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I 0.000
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I 0.000
APRR2 Arabidopsis thaliana AT4G18020 D 0.000
Bo1g019180 Brassica oleracea Bo1g019180 I 0.000
Bo7g105690 Brassica oleracea Bo7g105690 I 0.000
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I 0.000
Bra012623 Brassica rapa Bra012623 I 0.000
Bra013277 Brassica rapa Bra013277 I 0.000
Bra013278 Brassica rapa Bra013278 I 0.000
Bra013279 Brassica rapa Bra013279 I 0.000
Bra036015 Brassica rapa Bra036015 I 0.000
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I 0.000
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I 0.000
Carubv10004540m.g Capsella rubella Carubv10004540m.g I 0.000
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I 0.000
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I 0.000
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I 0.000
Ca_02285 Cicer arietinum Ca_02285 I 0.000
Ca_12825 Cicer arietinum Ca_12825 I 0.000
Ca_24009 Cicer arietinum Ca_24009 I 0.000
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I 0.000
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I 0.000
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I 0.000
Cla008926 Citrullus lanatus Cla008926 I 0.000
Cla016403 Citrullus lanatus Cla016403 I 0.000
Cucsa.313480 Cucumis sativus Cucsa.313480 I 0.000
Cucsa.321580 Cucumis sativus Cucsa.321580 I 0.000
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I 0.000
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I 0.000
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I 0.000
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I 0.000
GLYMA01G40900 Glycine max GLYMA01G40900 I 0.000
GLYMA05G06070 Glycine max GLYMA05G06070 I 0.000
GLYMA11G04441 Glycine max GLYMA11G04441 I 0.000
GLYMA17G16360 Glycine max GLYMA17G16360 I 0.000
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I 0.000
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I 0.000
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I 0.000
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I 0.000
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I 0.000
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I 0.000
GSMUA_Achr2G18200_001 Musa acuminata GSMUA_Achr2G18200_001 I 0.000
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I 0.000
LPERR01G08320 Leersia perrieri LPERR01G08320 I 0.000
Lus10003013.g Linum usitatissimum Lus10003013.g I 0.000
Lus10011044.g Linum usitatissimum Lus10011044.g I 0.000
Lus10040109.g Linum usitatissimum Lus10040109.g I 0.000
MDP0000237396 Malus domestica MDP0000237396 I 0.000
MDP0000248863 Malus domestica MDP0000248863 I 0.000
MTR_4g098870 Medicago truncatula MTR_4g098870 I 0.000
MTR_5g014040 Medicago truncatula MTR_5g014040 I 0.000
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I 0.000
OMERI01G08840 Oryza meridionalis OMERI01G08840 I 0.000
ONIVA01G11450 Oryza nivara ONIVA01G11450 I 0.000
OPUNC01G08680 Oryza punctata OPUNC01G08680 I 0.000
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I 0.000
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I 0.000
GLK2 Oryza sativa OS01G0239000 I 0.000
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I 0.000
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I 0.000
PK19826.1 Cannabis sativa PK19826.1 I 0.000
Pm014733 Prunus mume Pm014733 I 0.000
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I 0.000
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I 0.000
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I 0.000
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I 0.000
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I 0.000
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I 0.000
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I 0.000
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I 0.000
TCM_015780 Theobroma cacao TCM_015780 I 0.000
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I 0.000
APRR2 Vitis vinifera VIT_02s0012g00570 I 0.000