CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra014924 *(Brassica rapa)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	Bra014924	T001085_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.799	0.880
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.799	0.880
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.756	0.820
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.734	0.780
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.734	0.780
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.717	0.760
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.717	0.760
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.717	0.760
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.713	0.760
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.713	0.760
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.704	0.780
ERF7 M01617_2.00	Arabidopsis thaliana	NGCCGNMNNN	NNNKNCGGCN	PBM Weirauch et al.(2014) pTH7606	0.695	0.680
ERF7 M06620_2.00	Arabidopsis thaliana	YHNHYNYYDYCDCCGCCGYCD	HGRCGGCGGHGRHRRNRDNDR	Dap-seq OMalley et al.(2016) ERF7_col_a	0.695	0.680
ERF7 M06621_2.00	Arabidopsis thaliana	NNNHNNHNHHDSCGCCGCCRH	DYGGCGGCGSHDDNDNNDNNN	Dap-seq OMalley et al.(2016) ERF7_colamp_a	0.695	0.680
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.692	0.740
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.692	0.740
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.692	0.740
ERF13 M01615_2.00	Arabidopsis thaliana	VGCCGSCD	HGSCGGCB	PBM Weirauch et al.(2014) pTH7283	0.689	0.680
ERF13 M06612_2.00	Arabidopsis thaliana	NHDBMGCCGCCDYHD	HDRHGGCGGCKVHDN	Dap-seq OMalley et al.(2016) ERF13_colamp_a	0.689	0.680
ERF13 M06613_2.00	Arabidopsis thaliana	HDBMGCCGCCDYHDN	NHDRHGGCGGCKVHD	Dap-seq OMalley et al.(2016) ERF13_col_b	0.689	0.680
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.686	0.720
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.679	0.700
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.679	0.720
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.679	0.720
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.679	0.720
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.679	0.720
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.679	0.720
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra014924.1-P	AP2	11	63	VKYRGVRKRPWGKYAAEIRDSANHGARVWLGTFNTGEDAARAYDRAAFSMRGH

Links
Other AP2 family TFs
Other *Brassica rapa* TFs

897 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
30089.m001012	Ricinus communis	30089.m001012	N
Ca_10228	Cicer arietinum	Ca_10228	N
Ciclev10016383m.g	Citrus clementina	Ciclev10016383m.g	N
Cla011265	Citrullus lanatus	Cla011265	N
Cucsa.142580	Cucumis sativus	Cucsa.142580	N
evm.TU.supercontig_34.221	Carica papaya	evm.TU.supercontig_34.221	N
GLYMA13G03880	Glycine max	GLYMA13G03880	N
GLYMA20G10600	Glycine max	GLYMA20G10600	N
Gorai.013G266400	Gossypium raimondii	Gorai.013G266400	N
mgf016309m	Mimulus guttatus	mgf016309m	N
MTR_5g088230	Medicago truncatula	MTR_5g088230	N
orange1.1g025739m.g	Citrus sinensis	orange1.1g025739m.g	N
PGSC0003DMG400022706	Solanum tuberosum	PGSC0003DMG400022706	N
Pm001671	Prunus mume	Pm001671	N
POPTR_0001s22790	Populus trichocarpa	POPTR_0001s22790	N
PRUPE_ppa022266mg	Prunus persica	PRUPE_ppa022266mg	N
SapurV1A.0977s0060	Salix purpurea	SapurV1A.0977s0060	N
SapurV1A.1066s0010	Salix purpurea	SapurV1A.1066s0010	N
SapurV1A.1951s0040	Salix purpurea	SapurV1A.1951s0040	N
SapurV1A.3860s0010	Salix purpurea	SapurV1A.3860s0010	N
Solyc01g008980.2	Solanum lycopersicum	Solyc01g008980.2	N
TCM_042034	Theobroma cacao	TCM_042034	N
VIT_06s0009g01790	Vitis vinifera	VIT_06s0009g01790	N

Bra014924 (Brassica rapa) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

897 Related TFs

Bra014924 **(Brassica rapa)
AP2**