fgenesh2_kg.1__4007__AT1G49120.1 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 fgenesh2_kg.1__4007__AT1G49120.1 T001648_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.691 0.560
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.691 0.560
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.691 0.560
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.688 0.580
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.688 0.580
LEP
M06661_2.00 		Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH
DDNDRHDDHDRCGGCGGMGVN		 Dap-seq
OMalley et al.(2016)
LEP_col_a 		0.681 0.580
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.680 0.540
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.680 0.540
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.680 0.540
ERF087
M06573_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYYD
HRRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
AT1G28160_col_a 		0.680 0.560
ERF087
M06574_2.00 		Arabidopsis thaliana
HDYCKCCGCCGYCR
YGRCGGCGGMGRHD		 Dap-seq
OMalley et al.(2016)
AT1G28160_colamp_a 		0.680 0.560
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__4007__AT1G49120.1 AP2 85 135

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27904.m000217 Ricinus communis 27904.m000217 I 0.688
29983.m003147 Ricinus communis 29983.m003147 I 0.696
30128.m008571 Ricinus communis 30128.m008571 I 0.680
30131.m006951 Ricinus communis 30131.m006951 I 0.681
30190.m011321 Ricinus communis 30190.m011321 I 0.690
AMTR_s00010p00240320 Amborella trichopoda AMTR_s00010p00240320 I 0.685
AMTR_s00016p00238800 Amborella trichopoda AMTR_s00016p00238800 I 0.681
Aquca_015_00126 Aquilegia coerulea Aquca_015_00126 I 0.680
Aquca_036_00070 Aquilegia coerulea Aquca_036_00070 I 0.690
ERF087 Arabidopsis thaliana AT1G28160 D 0.680
ERF117 Arabidopsis thaliana AT1G49120 I 0.834
ERF4 Arabidopsis thaliana AT3G15210 D 0.680
LEP Arabidopsis thaliana AT5G13910 D 0.681
ERF9 Arabidopsis thaliana AT5G44210 D 0.688
BGIOSGA004611 Oryza indica BGIOSGA004611 I 0.688
BGIOSGA006366 Oryza indica BGIOSGA006366 I 0.680
BGIOSGA016321 Oryza indica BGIOSGA016321 I 0.682
BGIOSGA017796 Oryza indica BGIOSGA017796 I 0.681
Bo2g011600 Brassica oleracea Bo2g011600 I 0.681
Bo2g122260 Brassica oleracea Bo2g122260 I 0.688
Bo3g009410 Brassica oleracea Bo3g009410 I 0.682
Bo3g066710 Brassica oleracea Bo3g066710 I 0.680
Bo3g143080 Brassica oleracea Bo3g143080 I 0.680
Bo5g054550 Brassica oleracea Bo5g054550 I 0.679
Bo5g127380 Brassica oleracea Bo5g127380 I 0.687
Bo7g048420 Brassica oleracea Bo7g048420 I 0.680
Bo9g166320 Brassica oleracea Bo9g166320 I 0.681
Bostr.26675s0265 Boechera stricta Bostr.26675s0265 I 0.828
Bostr.28625s0184 Boechera stricta Bostr.28625s0184 I 0.680
Bostr.2902s0126 Boechera stricta Bostr.2902s0126 I 0.681
Bostr.3148s0037 Boechera stricta Bostr.3148s0037 I 0.688
Bra001588 Brassica rapa Bra001588 I 0.680
Bra006222 Brassica rapa Bra006222 I 0.682
Bra006325 Brassica rapa Bra006325 I 0.694
Bra008793 Brassica rapa Bra008793 I 0.681
Bra010901 Brassica rapa Bra010901 I 0.680
Bra015266 Brassica rapa Bra015266 I 0.688
Bra023440 Brassica rapa Bra023440 I 0.681
Bra027270 Brassica rapa Bra027270 I 0.687
Bra030076 Brassica rapa Bra030076 I 0.680
Bra036016 Brassica rapa Bra036016 I 0.688
BRADI2G21060 Brachypodium distachyon BRADI2G21060 I 0.679
BRADI2G52370 Brachypodium distachyon BRADI2G52370 I 0.691
BRADI3G44470 Brachypodium distachyon BRADI3G44470 I 0.678
Cagra.0381s0006 Capsella grandiflora Cagra.0381s0006 I 0.694
Cagra.0897s0005 Capsella grandiflora Cagra.0897s0005 I 0.701
Cagra.1613s0010 Capsella grandiflora Cagra.1613s0010 I 0.721
Cagra.1822s0047 Capsella grandiflora Cagra.1822s0047 I 0.680
Cagra.5588s0020 Capsella grandiflora Cagra.5588s0020 I 0.681
Carubv10002480m.g Capsella rubella Carubv10002480m.g I 0.681
Carubv10011371m.g Capsella rubella Carubv10011371m.g I 0.701
Carubv10012143m.g Capsella rubella Carubv10012143m.g I 0.680
Carubv10012513m.g Capsella rubella Carubv10012513m.g I 0.727
Carubv10014552m.g Capsella rubella Carubv10014552m.g I 0.680
Carubv10027246m.g Capsella rubella Carubv10027246m.g I 0.694
cassava11359.m1 Manihot esculenta cassava11359.m1 I 0.681
cassava11599.m1 Manihot esculenta cassava11599.m1 I 0.681
cassava1589.valid.m1 Manihot esculenta cassava1589.valid.m1 I 0.690
cassava20937.m1 Manihot esculenta cassava20937.m1 I 0.690
cassava21524.m1 Manihot esculenta cassava21524.m1 I 0.680
cassava21525.m1 Manihot esculenta cassava21525.m1 I 0.680
cassava32131.m1 Manihot esculenta cassava32131.m1 I 0.689
cassava32306.m1 Manihot esculenta cassava32306.m1 I 0.678
cassava37846.valid.m1 Manihot esculenta cassava37846.valid.m1 I 0.688
cassava46560.m1 Manihot esculenta cassava46560.m1 I 0.696
Ca_00327 Cicer arietinum Ca_00327 I 0.682
Ca_08291 Cicer arietinum Ca_08291 I 0.678
Ca_11261 Cicer arietinum Ca_11261 I 0.682
Ca_22534 Cicer arietinum Ca_22534 I 0.688
chr1.CM0222.280.nd Lotus japonicus chr1.CM0222.280.nd I 0.681
chr6.CM0114.120.nc Lotus japonicus chr6.CM0114.120.nc I 0.690
Ciclev10009484m.g Citrus clementina Ciclev10009484m.g I 0.688
Ciclev10016276m.g Citrus clementina Ciclev10016276m.g I 0.690
Ciclev10016463m.g Citrus clementina Ciclev10016463m.g I 0.690
Ciclev10017494m.g Citrus clementina Ciclev10017494m.g I 0.681
Cla002268 Citrullus lanatus Cla002268 I 0.682
Cla009214 Citrullus lanatus Cla009214 I 0.681
Cla009795 Citrullus lanatus Cla009795 I 0.688
Cla010206 Citrullus lanatus Cla010206 I 0.677
Cla020000 Citrullus lanatus Cla020000 I 0.682
Cla023087 Citrullus lanatus Cla023087 I 0.680
Cla023722 Citrullus lanatus Cla023722 I 0.684
Cucsa.046390 Cucumis sativus Cucsa.046390 I 0.682
Cucsa.122930 Cucumis sativus Cucsa.122930 I 0.684
Cucsa.126880 Cucumis sativus Cucsa.126880 I 0.680
Cucsa.195660 Cucumis sativus Cucsa.195660 I 0.682
Cucsa.286530 Cucumis sativus Cucsa.286530 I 0.677
Cucsa.394520 Cucumis sativus Cucsa.394520 I 0.680
ERF4_TOBAC Nicotiana tabacum ERF4_TOBAC D 0.691
Eucgr.B03565 Eucalyptus grandis Eucgr.B03565 I 0.681
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I 0.688
Eucgr.I01576 Eucalyptus grandis Eucgr.I01576 I 0.681
evm.TU.supercontig_131.83 Carica papaya evm.TU.supercontig_131.83 I 0.688
evm.TU.supercontig_27.16 Carica papaya evm.TU.supercontig_27.16 I 0.690
evm.TU.supercontig_70.47 Carica papaya evm.TU.supercontig_70.47 I 0.681
evm.TU.supercontig_83.80 Carica papaya evm.TU.supercontig_83.80 I 0.688
fgenesh2_kg.1__2978__AT1G28160.1 Arabidopsis lyrata fgenesh2_kg.1__2978__AT1G28160.1 I 0.680
ERF9 Arabidopsis lyrata fgenesh2_kg.8__388__AT5G44210.1 I 0.688
gene00975-v1.0-hybrid Fragaria vesca gene00975-v1.0-hybrid I 0.684
gene22872-v1.0-hybrid Fragaria vesca gene22872-v1.0-hybrid I 0.681
gene29738-v1.0-hybrid Fragaria vesca gene29738-v1.0-hybrid I 0.690
GLYMA02G07460 Glycine max GLYMA02G07460 I 0.681
GLYMA06G35710 Glycine max GLYMA06G35710 I 0.688
GLYMA12G26836 Glycine max GLYMA12G26836 I 0.688
GLYMA12G35550 Glycine max GLYMA12G35550 I 0.688
GLYMA13G30990 Glycine max GLYMA13G30990 I 0.690
GLYMA13G34920 Glycine max GLYMA13G34920 I 0.688
GLYMA15G08370 Glycine max GLYMA15G08370 I 0.688
Gorai.002G067600 Gossypium raimondii Gorai.002G067600 I 0.688
Gorai.005G197800 Gossypium raimondii Gorai.005G197800 I 0.681
Gorai.005G200200 Gossypium raimondii Gorai.005G200200 I 0.690
Gorai.006G088000 Gossypium raimondii Gorai.006G088000 I 0.690
Gorai.008G286700 Gossypium raimondii Gorai.008G286700 I 0.686
Gorai.009G375700 Gossypium raimondii Gorai.009G375700 I 0.688
Gorai.010G155900 Gossypium raimondii Gorai.010G155900 I 0.690
Gorai.010G256600 Gossypium raimondii Gorai.010G256600 I 0.687
Gorai.011G029800 Gossypium raimondii Gorai.011G029800 I 0.691
GRMZM2G023708 Zea mays GRMZM2G023708 I 0.682
GRMZM2G047999 Zea mays GRMZM2G047999 I 0.681
GRMZM2G079825 Zea mays GRMZM2G079825 I 0.682
GRMZM2G132185 Zea mays GRMZM2G132185 I 0.685
GRMZM2G310368 Zea mays GRMZM2G310368 I 0.690
GSMUA_Achr10G17370_001 Musa acuminata GSMUA_Achr10G17370_001 I 0.679
GSMUA_Achr1G25890_001 Musa acuminata GSMUA_Achr1G25890_001 I 0.678
GSMUA_Achr3G02360_001 Musa acuminata GSMUA_Achr3G02360_001 I 0.679
GSMUA_Achr4G23620_001 Musa acuminata GSMUA_Achr4G23620_001 I 0.682
GSMUA_Achr4G33270_001 Musa acuminata GSMUA_Achr4G33270_001 I 0.683
GSMUA_Achr6G00250_001 Musa acuminata GSMUA_Achr6G00250_001 I 0.683
GSMUA_Achr7G00350_001 Musa acuminata GSMUA_Achr7G00350_001 I 0.681
GSMUA_Achr8G03550_001 Musa acuminata GSMUA_Achr8G03550_001 I 0.690
GSMUA_Achr8G15830_001 Musa acuminata GSMUA_Achr8G15830_001 I 0.683
GSMUA_Achr9G11480_001 Musa acuminata GSMUA_Achr9G11480_001 I 0.690
LPERR01G29260 Leersia perrieri LPERR01G29260 I 0.688
LPERR02G14670 Leersia perrieri LPERR02G14670 I 0.678
LPERR04G07940 Leersia perrieri LPERR04G07940 I 0.682
LPERR05G17480 Leersia perrieri LPERR05G17480 I 0.681
Lus10015415.g Linum usitatissimum Lus10015415.g I 0.690
Lus10033664.g Linum usitatissimum Lus10033664.g I 0.684
Lus10039857.g Linum usitatissimum Lus10039857.g I 0.687
MDP0000263008 Malus domestica MDP0000263008 I 0.681
MDP0000264124 Malus domestica MDP0000264124 I 0.681
MDP0000324718 Malus domestica MDP0000324718 I 0.694
MDP0000868587 Malus domestica MDP0000868587 I 0.690
mgf019214m Mimulus guttatus mgf019214m I 0.690
mgf019421m Mimulus guttatus mgf019421m I 0.681
MLOC_24530 Hordeum vulgare MLOC_24530 I 0.690
MLOC_73358 Hordeum vulgare MLOC_73358 I 0.679
MLOC_73522 Hordeum vulgare MLOC_73522 I 0.678
MTR_2g014340 Medicago truncatula MTR_2g014340 I 0.683
MTR_2g078680 Medicago truncatula MTR_2g078680 I 0.694
MTR_4g078710 Medicago truncatula MTR_4g078710 I 0.684
OB01G42720 Oryza brachyantha OB01G42720 I 0.689
OB02G26200 Oryza brachyantha OB02G26200 I 0.678
OB04G18290 Oryza brachyantha OB04G18290 I 0.682
OBART01G33870 Oryza barthii OBART01G33870 I 0.688
OBART05G21580 Oryza barthii OBART05G21580 I 0.681
OGLUM01G38110 Oryza glumaepatula OGLUM01G38110 I 0.688
OGLUM02G18720 Oryza glumaepatula OGLUM02G18720 I 0.680
OGLUM04G10880 Oryza glumaepatula OGLUM04G10880 I 0.682
OGLUM05G22790 Oryza glumaepatula OGLUM05G22790 I 0.681
OLONG_021733 Oryza longistaminata OLONG_021733 I 0.688
OMERI01G30710 Oryza meridionalis OMERI01G30710 I 0.688
OMERI04G06880 Oryza meridionalis OMERI04G06880 I 0.680
OMERI04G09670 Oryza meridionalis OMERI04G09670 I 0.682
OMERI05G19490 Oryza meridionalis OMERI05G19490 I 0.681
ONIVA01G38670 Oryza nivara ONIVA01G38670 I 0.688
ONIVA04G09120 Oryza nivara ONIVA04G09120 I 0.682
ONIVA05G22270 Oryza nivara ONIVA05G22270 I 0.681
OPUNC01G32930 Oryza punctata OPUNC01G32930 I 0.688
OPUNC04G09190 Oryza punctata OPUNC04G09190 I 0.682
OPUNC05G19230 Oryza punctata OPUNC05G19230 I 0.681
orange1.1g026240m.g Citrus sinensis orange1.1g026240m.g I 0.690
orange1.1g028454m.g Citrus sinensis orange1.1g028454m.g I 0.688
orange1.1g037093m.g Citrus sinensis orange1.1g037093m.g I 0.681
ORGLA01G0278100 Oryza glaberrima ORGLA01G0278100 I 0.688
ORGLA02G0159100 Oryza glaberrima ORGLA02G0159100 I 0.680
ORGLA05G0187600 Oryza glaberrima ORGLA05G0187600 I 0.681
ORUFI01G37120 Oryza rufipogon ORUFI01G37120 I 0.688
ORUFI02G19410 Oryza rufipogon ORUFI02G19410 I 0.680
ORUFI04G12370 Oryza rufipogon ORUFI04G12370 I 0.682
ORUFI05G22850 Oryza rufipogon ORUFI05G22850 I 0.681
OS01G0797600 Oryza sativa OS01G0797600 I 0.688
OS02G0520000 Oryza sativa OS02G0520000 I 0.680
OS04G0399800 Oryza sativa OS04G0399800 I 0.682
OS05G0497300 Oryza sativa OS05G0497300 I 0.681
Pavir.Aa01903 Panicum virgatum Pavir.Aa01903 I 0.681
Pavir.Ab01422 Panicum virgatum Pavir.Ab01422 I 0.681
Pavir.Ca01358 Panicum virgatum Pavir.Ca01358 I 0.679
Pavir.Ea03147 Panicum virgatum Pavir.Ea03147 I 0.688
Pavir.Eb03458 Panicum virgatum Pavir.Eb03458 I 0.688
Pavir.Gb01913 Panicum virgatum Pavir.Gb01913 I 0.682
Pavir.J14354 Panicum virgatum Pavir.J14354 I 0.681
Pavir.J16868 Panicum virgatum Pavir.J16868 I 0.682
PGSC0003DMG400002185 Solanum tuberosum PGSC0003DMG400002185 I 0.681
PGSC0003DMG400002191 Solanum tuberosum PGSC0003DMG400002191 I 0.681
PGSC0003DMG400012828 Solanum tuberosum PGSC0003DMG400012828 I 0.690
PGSC0003DMG400013744 Solanum tuberosum PGSC0003DMG400013744 I 0.689
PGSC0003DMG400022823 Solanum tuberosum PGSC0003DMG400022823 I 0.693
PGSC0003DMG400026821 Solanum tuberosum PGSC0003DMG400026821 I 0.691
PK02602.1 Cannabis sativa PK02602.1 I 0.690
PK19363.1 Cannabis sativa PK19363.1 D 0.691
Pm007113 Prunus mume Pm007113 I 0.681
Pm011391 Prunus mume Pm011391 I 0.694
POPTR_0001s12820 Populus trichocarpa POPTR_0001s12820 I 0.680
POPTR_0001s15710 Populus trichocarpa POPTR_0001s15710 I 0.681
POPTR_0001s40770 Populus trichocarpa POPTR_0001s40770 I 0.688
POPTR_0003s07540 Populus trichocarpa POPTR_0003s07540 I 0.681
POPTR_0003s15940 Populus trichocarpa POPTR_0003s15940 I 0.680
POPTR_0004s04720 Populus trichocarpa POPTR_0004s04720 I 0.690
POPTR_0011s05580 Populus trichocarpa POPTR_0011s05580 I 0.690
POPTR_0011s11620 Populus trichocarpa POPTR_0011s11620 I 0.688
POPTR_0017s04540 Populus trichocarpa POPTR_0017s04540 I 0.688
PRUPE_ppa010982mg Prunus persica PRUPE_ppa010982mg I 0.694
PRUPE_ppa018569mg Prunus persica PRUPE_ppa018569mg I 0.681
Q84LQ6_SOLLC Solanum lycopersicum Q84LQ6_SOLLC I 0.692
Q84XB1_SOLLC Solanum lycopersicum Q84XB1_SOLLC I 0.692
SapurV1A.0012s0580 Salix purpurea SapurV1A.0012s0580 I 0.690
SapurV1A.0032s0470 Salix purpurea SapurV1A.0032s0470 I 0.685
SapurV1A.0122s0040 Salix purpurea SapurV1A.0122s0040 I 0.680
SapurV1A.0210s0020 Salix purpurea SapurV1A.0210s0020 I 0.681
SapurV1A.0444s0130 Salix purpurea SapurV1A.0444s0130 I 0.680
SapurV1A.0444s0140 Salix purpurea SapurV1A.0444s0140 I 0.680
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I 0.688
SapurV1A.1325s0040 Salix purpurea SapurV1A.1325s0040 I 0.688
SapurV1A.3143s0020 Salix purpurea SapurV1A.3143s0020 I 0.685
Sb03g037080 Sorghum bicolor Sb03g037080 I 0.690
Sb06g014800 Sorghum bicolor Sb06g014800 I 0.682
ERF10 Arabidopsis lyrata scaffold_100331.1 I 0.683
ATERF-4 Arabidopsis lyrata scaffold_301765.1 I 0.680
LEP Arabidopsis lyrata scaffold_601402.1 I 0.681
Si002729m.g Setaria italica Si002729m.g I 0.688
Si012587m.g Setaria italica Si012587m.g I 0.682
Si019641m.g Setaria italica Si019641m.g I 0.681
Si023088m.g Setaria italica Si023088m.g I 0.680
Solyc07g053740.1 Solanum lycopersicum Solyc07g053740.1 I 0.691
Solyc10g009110.1 Solanum lycopersicum Solyc10g009110.1 I 0.692
Solyc11g045680.1 Solanum lycopersicum Solyc11g045680.1 I 0.681
Solyc11g045690.1 Solanum lycopersicum Solyc11g045690.1 I 0.679
TCM_008162 Theobroma cacao TCM_008162 I 0.691
TCM_008270 Theobroma cacao TCM_008270 I 0.681
TCM_029820 Theobroma cacao TCM_029820 I 0.690
TCM_031608 Theobroma cacao TCM_031608 I 0.688
Thhalv10003431m.g Eutrema salsugineum Thhalv10003431m.g I 0.690
Thhalv10009328m.g Eutrema salsugineum Thhalv10009328m.g I 0.680
Thhalv10009647m.g Eutrema salsugineum Thhalv10009647m.g I 0.692
Thhalv10012016m.g Eutrema salsugineum Thhalv10012016m.g I 0.721
Thhalv10015796m.g Eutrema salsugineum Thhalv10015796m.g I 0.681
Thhalv10021456m.g Eutrema salsugineum Thhalv10021456m.g I 0.680
TRAES3BF075600050CFD_g Triticum aestivum TRAES3BF075600050CFD_g I 0.689
Traes_2AL_F24D031AA Triticum aestivum Traes_2AL_F24D031AA I 0.678
Traes_2BL_5DC21F3CD Triticum aestivum Traes_2BL_5DC21F3CD I 0.678
Traes_2BL_970693C1F Triticum aestivum Traes_2BL_970693C1F I 0.678
Traes_2BL_E7871AFBA Triticum aestivum Traes_2BL_E7871AFBA I 0.678
TRIUR3_35273 Triticum urartu TRIUR3_35273 I 0.678
VIT_10s0003g00140 Vitis vinifera VIT_10s0003g00140 I 0.691
VIT_12s0028g03270 Vitis vinifera VIT_12s0028g03270 I 0.693
LEP Vitis vinifera VIT_14s0068g00860 I 0.681
VIT_19s0014g02240 Vitis vinifera VIT_19s0014g02240 I 0.690