CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MLOC_38561 *(Hordeum vulgare)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	MLOC_38561	T002696_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.786	0.837
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.786	0.837
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.783	0.837
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.772	0.857
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.771	0.857
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.748	0.714
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.741	0.735
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.734	0.816
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.728	0.776
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.728	0.776
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.725	0.755
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.720	0.714
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.712	0.694
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.710	0.673
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.710	0.673
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.707	0.694
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.707	0.694
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.707	0.694
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.703	0.673
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.703	0.673
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.703	0.714
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.703	0.673
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.703	0.714
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.703	0.714
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.703	0.714
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.701	0.673
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.700	0.714
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.700	0.755
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.700	0.755
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.700	0.694
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.700	0.694
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.700	0.694
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.695	0.673
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.691	0.694
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.690	0.694
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.690	0.694
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.690	0.694
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.690	0.633
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.684	0.673
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.684	0.673
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.684	0.673
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.681	0.673
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.681	0.673
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.681	0.673
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.681	0.673
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.681	0.673
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.681	0.673
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.680	0.612
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.677	0.673
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.677	0.673
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.677	0.673
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.677	0.653
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.677	0.653
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
MLOC_38561.1	AP2	48	99	NQYRGIRQRPWGKWAAEIRDPSKGVRVWLGTYDTAEEAARAYDAEARKIRGK
MLOC_38561.3	AP2	36	87	NQYRGIRQRPWGKWAAEIRDPSKGVRVWLGTYDTAEEAARAYDAEARKIRGK

Links
Other AP2 family TFs
Other *Hordeum vulgare* TFs

1552 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
27763.m000042	Ricinus communis	27763.m000042	I	0.000
30128.m008730	Ricinus communis	30128.m008730	I	0.000
Aquca_047_00006	Aquilegia coerulea	Aquca_047_00006	I	0.000
MYB75	Arabidopsis thaliana	AT1G56650	I	0.000
MYB113	Arabidopsis thaliana	AT1G66370	D	0.000
MYB114	Arabidopsis thaliana	AT1G66380	I	0.000
MYB90	Arabidopsis thaliana	AT1G66390	I	0.000
Bo00835s060	Brassica oleracea	Bo00835s060	I	0.000
Bo6g099880	Brassica oleracea	Bo6g099880	I	0.000
Bo6g100940	Brassica oleracea	Bo6g100940	I	0.000
Bostr.26959s0279	Boechera stricta	Bostr.26959s0279	I	0.000
Bra001917	Brassica rapa	Bra001917	I	0.000
Bra004162	Brassica rapa	Bra004162	I	0.000
Bra039763	Brassica rapa	Bra039763	I	0.000
Cagra.0463s0006	Capsella grandiflora	Cagra.0463s0006	I	0.000
Cagra.0463s0007	Capsella grandiflora	Cagra.0463s0007	I	0.000
Cagra.0463s0008	Capsella grandiflora	Cagra.0463s0008	I	0.000
Cagra.2400s0001	Capsella grandiflora	Cagra.2400s0001	I	0.000
Cagra.2629s0007	Capsella grandiflora	Cagra.2629s0007	I	0.000
Carubv10020856m.g	Capsella rubella	Carubv10020856m.g	I	0.000
Carubv10020888m.g	Capsella rubella	Carubv10020888m.g	I	0.000
Ca_22078	Cicer arietinum	Ca_22078	I	0.000
Ciclev10013455m.g	Citrus clementina	Ciclev10013455m.g	I	0.000
Eucgr.F02842	Eucalyptus grandis	Eucgr.F02842	I	0.000
Eucgr.H04157	Eucalyptus grandis	Eucgr.H04157	I	0.000
Eucgr.J01553	Eucalyptus grandis	Eucgr.J01553	I	0.000
Eucgr.J01555	Eucalyptus grandis	Eucgr.J01555	I	0.000
Eucgr.J01569	Eucalyptus grandis	Eucgr.J01569	I	0.000
Eucgr.J01573	Eucalyptus grandis	Eucgr.J01573	I	0.000
Eucgr.J01574	Eucalyptus grandis	Eucgr.J01574	I	0.000
Eucgr.J01576	Eucalyptus grandis	Eucgr.J01576	I	0.000
Eucgr.J01578	Eucalyptus grandis	Eucgr.J01578	I	0.000
Eucgr.J01580	Eucalyptus grandis	Eucgr.J01580	I	0.000
Eucgr.J01586	Eucalyptus grandis	Eucgr.J01586	I	0.000
PAP1	Arabidopsis lyrata	fgenesh2_kg.1__4777__AT1G56650.1	I	0.000
MYB113	Arabidopsis lyrata	fgenesh2_kg.2__869__AT1G66370.1	I	0.000
GLYMA09G36966	Glycine max	GLYMA09G36966	I	0.000
GLYMA18G49690	Glycine max	GLYMA18G49690	I	0.000
Gorai.001G087200	Gossypium raimondii	Gorai.001G087200	I	0.000
Gorai.001G087400	Gossypium raimondii	Gorai.001G087400	I	0.000
Gorai.013G118300	Gossypium raimondii	Gorai.013G118300	I	0.000
Lus10009130.g	Linum usitatissimum	Lus10009130.g	I	0.000
Lus10028513.g	Linum usitatissimum	Lus10028513.g	I	0.000
Lus10042522.g	Linum usitatissimum	Lus10042522.g	I	0.000
mgf019317m	Mimulus guttatus	mgf019317m	I	0.000
MTR_0001s0360	Medicago truncatula	MTR_0001s0360	I	0.000
MTR_5g078800	Medicago truncatula	MTR_5g078800	I	0.000
MTR_5g078860	Medicago truncatula	MTR_5g078860	I	0.000
MTR_5g078910	Medicago truncatula	MTR_5g078910	I	0.000
MTR_5g078950	Medicago truncatula	MTR_5g078950	I	0.000
MTR_5g079120	Medicago truncatula	MTR_5g079120	I	0.000
MTR_5g079220	Medicago truncatula	MTR_5g079220	I	0.000
MTR_5g079290	Medicago truncatula	MTR_5g079290	I	0.000
MTR_7g017260	Medicago truncatula	MTR_7g017260	I	0.000
MTR_8g060940	Medicago truncatula	MTR_8g060940	I	0.000
PK05760.1	Cannabis sativa	PK05760.1	I	0.000
PK17827.1	Cannabis sativa	PK17827.1	I	0.000
Pm029440	Prunus mume	Pm029440	I	0.000
Pm029442	Prunus mume	Pm029442	I	0.000
Pm029445	Prunus mume	Pm029445	I	0.000
POPTR_0005s14450	Populus trichocarpa	POPTR_0005s14450	I	0.000
PRUPE_ppa010069mg	Prunus persica	PRUPE_ppa010069mg	I	0.000
PRUPE_ppa026640mg	Prunus persica	PRUPE_ppa026640mg	I	0.000
scaffold_201357.1	Arabidopsis lyrata	scaffold_201357.1	I	0.000
ATMYB90	Arabidopsis lyrata	scaffold_201358.1	I	0.000
Solyc10g086250.1	Solanum lycopersicum	Solyc10g086250.1	I	0.000
Solyc10g086260.1	Solanum lycopersicum	Solyc10g086260.1	I	0.000
Solyc10g086270.1	Solanum lycopersicum	Solyc10g086270.1	I	0.000
Solyc10g086290.1	Solanum lycopersicum	Solyc10g086290.1	I	0.000
TCM_019192	Theobroma cacao	TCM_019192	I	0.000
TCM_026054	Theobroma cacao	TCM_026054	I	0.000
Thhalv10019041m.g	Eutrema salsugineum	Thhalv10019041m.g	I	0.000
VIT_02s0033g00390	Vitis vinifera	VIT_02s0033g00390	I	0.000
VIT_02s0033g00400	Vitis vinifera	VIT_02s0033g00400	I	0.000
VIT_02s0033g00410	Vitis vinifera	VIT_02s0033g00410	I	0.000
VIT_02s0033g00450	Vitis vinifera	VIT_02s0033g00450	I	0.000
VIT_14s0006g01290	Vitis vinifera	VIT_14s0006g01290	I	0.000

MLOC_38561 (Hordeum vulgare) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1552 Related TFs

MLOC_38561 **(Hordeum vulgare)
AP2**