CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OGLUM03G03790 *(Oryza glumaepatula)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	OGLUM03G03790	T003219_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.774	0.760
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.772	0.800
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.772	0.800
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.757	0.820
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.757	0.820
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.757	0.820
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.752	0.760
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.750	0.720
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.750	0.720
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.750	0.720
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.749	0.760
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.747	0.680
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.747	0.680
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.742	0.760
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.742	0.760
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.742	0.760
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.742	0.760
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.742	0.760
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.742	0.760
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.742	0.760
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.742	0.760
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.741	0.740
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.738	0.820
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.732	0.740
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.729	0.740
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.722	0.740
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.720	0.740
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.720	0.740
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.720	0.740
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.720	0.720
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.714	0.780
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.714	0.780
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.710	0.720
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.710	0.720
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.703	0.740
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.701	0.740
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.701	0.740
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.700	0.720
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.700	0.720
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.700	0.680
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.699	0.740
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.699	0.740
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.699	0.740
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.699	0.700
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.699	0.700
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.697	0.760
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.697	0.760
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.697	0.760
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.695	0.700
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.695	0.700
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.692	0.740
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.690	0.680
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.689	0.740
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.688	0.700
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.688	0.700
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.688	0.660
ERF098 M01618_2.00	Arabidopsis thaliana	NNGCCGNC	GNCGGCNN	PBM Weirauch et al.(2014) pTH8259	0.687	0.700
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.686	0.660
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.685	0.680
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.685	0.680
P93392_TOBAC M09731_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$OPBP1_01	0.684	0.740
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.682	0.660
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.682	0.680
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.681	0.640
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.681	0.640
OS05G0497200 M01636_2.00	Oryza sativa	CGSCGCCR	YGGCGSCG	PBM Weirauch et al.(2014) pTH8640	0.680	0.640
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OGLUM03G03790.1	AP2	13	65	SSYRGVRKRPWGKFAAEIRDPERGGARVWLGTFDTAEEAARAYDRAAFAMKGA

Links
Other AP2 family TFs
Other *Oryza glumaepatula* TFs

1989 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aan_R005906	Calypte anna	Aan_R005906	I
Afo_R013895	Aptenodytes forsteri	Afo_R013895	I
Alligator_sinensis_CCG001426.1	Alligator sinensis	Alligator_sinensis_CCG001426.1	I
Brh_R010359	Buceros rhinoceros	Brh_R010359	I
Cmyd_10015325	Chelonia mydas	Cmyd_10015325	I
MTF1	Anolis carolinensis	ENSACAG00000017181	I
ENSAMEG00000001186	Ailuropoda melanoleuca	ENSAMEG00000001186	I
ENSAMXG00000001644	Astyanax mexicanus	ENSAMXG00000001644	I
ENSAPLG00000016056	Anas platyrhynchos	ENSAPLG00000016056	I
MTF1	Bos taurus	ENSBTAG00000006511	I
ENSBTAP00000008535-D1	Bos grunniens	ENSBTAP00000008535-D1	I
MTF1	Canis familiaris	ENSCAFG00000003247	I
MTF1	Callithrix jacchus	ENSCJAG00000002097	I
MTF1	Cavia porcellus	ENSCPOG00000014657	I
ENSCSAG00000001118	Chlorocebus sabaeus	ENSCSAG00000001118	I
MTF1	Dasypus novemcinctus	ENSDNOG00000009118	I
MTF1	Equus caballus	ENSECAG00000017235	I
ENSFALG00000000973	Ficedula albicollis	ENSFALG00000000973	I
MTF1	Felis catus	ENSFCAG00000011020	I
MTF1	Homo sapiens	ENSG00000188786	D
MTF1	Gasterosteus aculeatus	ENSGACG00000013875	I
MTF1	Gallus gallus	ENSGALG00000001639	I
MTF1	Gorilla gorilla	ENSGGOG00000007624	I
ENSGMOG00000015592	Gadus morhua	ENSGMOG00000015592	I
ENSLOCG00000003310	Lepisosteus oculatus	ENSLOCG00000003310	I
MTF1	Meleagris gallopavo	ENSMGAG00000003052	I
MTF1	Microcebus murinus	ENSMICG00000011969	I
MTF1	Myotis lucifugus	ENSMLUG00000000963	I
MTF1	Macaca mulatta	ENSMMUG00000023275	I
MTF1	Monodelphis domestica	ENSMODG00000017745	I
ENSMPUG00000014538	Mustela putorius furo	ENSMPUG00000014538	I
Mtf1	Mus musculus	ENSMUSG00000028890	D
ENSNLEG00000011682	Nomascus leucogenys	ENSNLEG00000011682	I
MTF1	Ornithorhynchus anatinus	ENSOANG00000002047	I
ENSOARG00000019896	Ovis aries	ENSOARG00000019896	I
MTF1	Oryctolagus cuniculus	ENSOCUG00000005389	I
MTF1	Otolemur garnettii	ENSOGAG00000000872	I
ENSONIG00000016218	Oreochromis niloticus	ENSONIG00000016218	I
MTF1	Oryzias latipes	ENSORLG00000014411	I
ENSP00000362127	Macaca fascicularis	ENSP00000362127	I
ENSPANG00000016211	Papio anubis	ENSPANG00000016211	I
ENSPFOG00000013962	Poecilia formosa	ENSPFOG00000013962	I
ENSPPYG00000001521	Pongo abelii	ENSPPYG00000001521	I
ENSPSIG00000005687	Pelodiscus sinensis	ENSPSIG00000005687	I
MTF1	Pan troglodytes	ENSPTRG00000022932	I
MTF1	Pteropus vampyrus	ENSPVAG00000010152	I
Mtf1	Rattus norvegicus	ENSRNOG00000025724	I
LOC100909856	Rattus norvegicus	ENSRNOG00000050240	I
ENSSHAG00000014007	Sarcophilus harrisii	ENSSHAG00000014007	I
ENSSTOG00000025276	Ictidomys tridecemlineatus	ENSSTOG00000025276	I
MTF1	Taeniopygia guttata	ENSTGUG00000001500	I
MTF1	Takifugu rubripes	ENSTRUG00000005297	I
ENSTSYG00000005589	Tarsius syrichta	ENSTSYG00000005589	I
MTF1	Tursiops truncatus	ENSTTRG00000013535	I
ENSXMAG00000014614	Xiphophorus maculatus	ENSXMAG00000014614	I
Gfo_R001683	Geospiza fortis	Gfo_R001683	I
Myotis_brandtii_MTF1_10028927	Myotis brandtii	Myotis_brandtii_MTF1_10028927	I
Ogr09934	Ophisaurus gracilis	Ogr09934	I
Pvit_17763	Pogona vitticeps	Pvit_17763	I
Sakowv30031703m.g	Saccoglossus kowalevskii	Sakowv30031703m.g	I
Tal_R009432	Tyto alba	Tal_R009432	I
tetur01g09970	Tetranychus urticae	tetur01g09970	I
mtf1	Xenopus tropicalis	XB-GENE-979128	I
mtf1.L	Xenopus laevis	XB-GENE-979131	I

OGLUM03G03790 (Oryza glumaepatula) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1989 Related TFs

OGLUM03G03790 **(Oryza glumaepatula)
AP2**