POPTR_0006s27710 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0006s27710 T004664_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF003
M06667_2.00 		Arabidopsis thaliana
DYCDCCRCCGYMDHHDYHN
NDRHDDHKRCGGYGGHGRH		 Dap-seq
OMalley et al.(2016)
ESE3_col_a 		0.857 0.980
ERF003
M06668_2.00 		Arabidopsis thaliana
HDYCKCCGCCGYHDH
DHDRCGGCGGMGRHD		 Dap-seq
OMalley et al.(2016)
ESE3_colamp_a 		0.857 0.980
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.727 0.824
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s27710.1 AP2 6 57

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

298 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29598.m000464 Ricinus communis 29598.m000464 N 0.000
29883.m001988 Ricinus communis 29883.m001988 N 0.000
Aquca_017_00590 Aquilegia coerulea Aquca_017_00590 N 0.000
AT1G03040 Arabidopsis thaliana AT1G03040 N 0.000
UNE12 Arabidopsis thaliana AT4G02590 N 0.000
BGIOSGA013729 Oryza indica BGIOSGA013729 I 0.000
BGIOSGA025266 Oryza indica BGIOSGA025266 I 0.000
BGIOSGA030928 Oryza indica BGIOSGA030928 N 0.000
Bo01031s030 Brassica oleracea Bo01031s030 N 0.000
Bo2g100750 Brassica oleracea Bo2g100750 N 0.000
Bo5g003580 Brassica oleracea Bo5g003580 N 0.000
Bo9g005930 Brassica oleracea Bo9g005930 N 0.000
Bostr.2983s0202 Boechera stricta Bostr.2983s0202 N 0.000
Bra000872 Brassica rapa Bra000872 N 0.000
Bra018539 Brassica rapa Bra018539 N 0.000
Bra033368 Brassica rapa Bra033368 N 0.000
Bra036256 Brassica rapa Bra036256 N 0.000
BRADI1G05430 Brachypodium distachyon BRADI1G05430 I 0.000
BRADI1G55427 Brachypodium distachyon BRADI1G55427 I 0.000
BRADI3G54070 Brachypodium distachyon BRADI3G54070 I 0.000
Cagra.0635s0023 Capsella grandiflora Cagra.0635s0023 N 0.000
Cagra.0897s0074 Capsella grandiflora Cagra.0897s0074 N 0.000
Carubv10001523m.g Capsella rubella Carubv10001523m.g N 0.000
Carubv10009831m.g Capsella rubella Carubv10009831m.g N 0.000
cassava18573.valid.m1 Manihot esculenta cassava18573.valid.m1 N 0.000
cassava22704.valid.m1 Manihot esculenta cassava22704.valid.m1 N 0.000
cassava36725.valid.m1 Manihot esculenta cassava36725.valid.m1 N 0.000
Ca_03755 Cicer arietinum Ca_03755 N 0.000
Ca_07790 Cicer arietinum Ca_07790 N 0.000
Ca_12194 Cicer arietinum Ca_12194 N 0.000
chr1.CM0375.380.nc Lotus japonicus chr1.CM0375.380.nc N 0.000
chr5.LjT29J15.30.nc Lotus japonicus chr5.LjT29J15.30.nc N 0.000
Ciclev10001768m.g Citrus clementina Ciclev10001768m.g N 0.000
Ciclev10021443m.g Citrus clementina Ciclev10021443m.g N 0.000
Cla011475 Citrullus lanatus Cla011475 N 0.000
Cla015040 Citrullus lanatus Cla015040 N 0.000
Cucsa.388780 Cucumis sativus Cucsa.388780 N 0.000
Eucgr.B01487 Eucalyptus grandis Eucgr.B01487 N 0.000
Eucgr.H04337 Eucalyptus grandis Eucgr.H04337 N 0.000
evm.TU.supercontig_117.94 Carica papaya evm.TU.supercontig_117.94 N 0.000
evm.TU.supercontig_52.97 Carica papaya evm.TU.supercontig_52.97 N 0.000
F775_30957 Aegilops tauschii F775_30957 I 0.000
fgenesh2_kg.1__235__AT1G03040.1 Arabidopsis lyrata fgenesh2_kg.1__235__AT1G03040.1 N 0.000
UNE12 Arabidopsis lyrata fgenesh2_kg.6__3435__AT4G02590.2 N 0.000
gene08188-v1.0-hybrid Fragaria vesca gene08188-v1.0-hybrid N 0.000
gene16564-v1.0-hybrid Fragaria vesca gene16564-v1.0-hybrid N 0.000
GLYMA02G16110 Glycine max GLYMA02G16110 N 0.000
GLYMA03G31510 Glycine max GLYMA03G31510 N 0.000
GLYMA10G03690 Glycine max GLYMA10G03690 N 0.000
GLYMA10G30430 Glycine max GLYMA10G30430 N 0.000
GLYMA19G34360 Glycine max GLYMA19G34360 N 0.000
GLYMA20G36770 Glycine max GLYMA20G36770 N 0.000
Gorai.001G242500 Gossypium raimondii Gorai.001G242500 N 0.000
Gorai.004G075200 Gossypium raimondii Gorai.004G075200 N 0.000
Gorai.004G218900 Gossypium raimondii Gorai.004G218900 N 0.000
Gorai.007G141800 Gossypium raimondii Gorai.007G141800 N 0.000
Gorai.007G277200 Gossypium raimondii Gorai.007G277200 N 0.000
GRMZM2G004356 Zea mays GRMZM2G004356 I 0.000
GRMZM2G162382 Zea mays GRMZM2G162382 I 0.000
GSMUA_Achr4G21070_001 Musa acuminata GSMUA_Achr4G21070_001 I 0.000
GSMUA_Achr5G03100_001 Musa acuminata GSMUA_Achr5G03100_001 I 0.000
GSMUA_Achr9G25560_001 Musa acuminata GSMUA_Achr9G25560_001 I 0.000
LPERR01G07000 Leersia perrieri LPERR01G07000 I 0.000
LPERR03G31640 Leersia perrieri LPERR03G31640 I 0.000
LPERR07G04600 Leersia perrieri LPERR07G04600 I 0.000
Lus10002720.g Linum usitatissimum Lus10002720.g N 0.000
Lus10006587.g Linum usitatissimum Lus10006587.g N 0.000
Lus10014726.g Linum usitatissimum Lus10014726.g N 0.000
Lus10015909.g Linum usitatissimum Lus10015909.g N 0.000
Lus10018761.g Linum usitatissimum Lus10018761.g N 0.000
Lus10024850.g Linum usitatissimum Lus10024850.g N 0.000
MDP0000176749 Malus domestica MDP0000176749 N 0.000
MDP0000295593 Malus domestica MDP0000295593 N 0.000
mgf001465m Mimulus guttatus mgf001465m N 0.000
MTR_1g070870 Medicago truncatula MTR_1g070870 N 0.000
MTR_1g080890 Medicago truncatula MTR_1g080890 N 0.000
OB07G13990 Oryza brachyantha OB07G13990 I 0.000
OBART03G37400 Oryza barthii OBART03G37400 I 0.000
OBART07G05280 Oryza barthii OBART07G05280 I 0.000
OGLUM03G37150 Oryza glumaepatula OGLUM03G37150 I 0.000
OGLUM07G04790 Oryza glumaepatula OGLUM07G04790 I 0.000
OLONG_014165 Oryza longistaminata OLONG_014165 I 0.000
OMERI03G34570 Oryza meridionalis OMERI03G34570 I 0.000
OMERI05G15760 Oryza meridionalis OMERI05G15760 I 0.000
OMERI06G24090 Oryza meridionalis OMERI06G24090 I 0.000
ONIVA03G38760 Oryza nivara ONIVA03G38760 I 0.000
ONIVA07G04020 Oryza nivara ONIVA07G04020 I 0.000
OPUNC03G34510 Oryza punctata OPUNC03G34510 I 0.000
OPUNC07G05040 Oryza punctata OPUNC07G05040 I 0.000
OPUNC09G11520 Oryza punctata OPUNC09G11520 I 0.000
orange1.1g022649m.g Citrus sinensis orange1.1g022649m.g N 0.000
ORGLA06G0244900 Oryza glaberrima ORGLA06G0244900 I 0.000
ORGLA07G0044500 Oryza glaberrima ORGLA07G0044500 I 0.000
ORUFI07G05060 Oryza rufipogon ORUFI07G05060 I 0.000
OS03G0797600 Oryza sativa OS03G0797600 I 0.000
Pavir.Ba03672 Panicum virgatum Pavir.Ba03672 I 0.000
Pavir.Fa00651 Panicum virgatum Pavir.Fa00651 N 0.000
Pavir.J00283 Panicum virgatum Pavir.J00283 I 0.000
Pavir.J03221 Panicum virgatum Pavir.J03221 I 0.000
Pavir.J04249 Panicum virgatum Pavir.J04249 I 0.000
Pavir.J25149 Panicum virgatum Pavir.J25149 N 0.000
PGSC0003DMG400006089 Solanum tuberosum PGSC0003DMG400006089 N 0.000
PGSC0003DMG400013393 Solanum tuberosum PGSC0003DMG400013393 N 0.000
PGSC0003DMG400019334 Solanum tuberosum PGSC0003DMG400019334 N 0.000
PK20184.1 Cannabis sativa PK20184.1 N 0.000
PK25419.1 Cannabis sativa PK25419.1 N 0.000
Pm003525 Prunus mume Pm003525 N 0.000
Pm020229 Prunus mume Pm020229 N 0.000
POPTR_0002s04620 Populus trichocarpa POPTR_0002s04620 N 0.000
POPTR_0005s05500 Populus trichocarpa POPTR_0005s05500 N 0.000
POPTR_0005s23930 Populus trichocarpa POPTR_0005s23930 N 0.000
PRUPE_ppa008172mg Prunus persica PRUPE_ppa008172mg N 0.000
PRUPE_ppa009299mg Prunus persica PRUPE_ppa009299mg N 0.000
SapurV1A.0006s1290 Salix purpurea SapurV1A.0006s1290 N 0.000
SapurV1A.0729s0150 Salix purpurea SapurV1A.0729s0150 N 0.000
SapurV1A.0860s0050 Salix purpurea SapurV1A.0860s0050 N 0.000
Sb01g005130 Sorghum bicolor Sb01g005130 I 0.000
Sb02g004570 Sorghum bicolor Sb02g004570 I 0.000
Si030704m.g Setaria italica Si030704m.g I 0.000
Si036929m.g Setaria italica Si036929m.g I 0.000
Solyc03g005350.2 Solanum lycopersicum Solyc03g005350.2 N 0.000
Solyc09g065820.2 Solanum lycopersicum Solyc09g065820.2 N 0.000
Solyc09g083220.2 Solanum lycopersicum Solyc09g083220.2 N 0.000
TCM_004217 Theobroma cacao TCM_004217 N 0.000
TCM_026346 Theobroma cacao TCM_026346 N 0.000
Thhalv10008279m.g Eutrema salsugineum Thhalv10008279m.g N 0.000
Thhalv10028824m.g Eutrema salsugineum Thhalv10028824m.g N 0.000
Traes_5BL_DB5410008 Triticum aestivum Traes_5BL_DB5410008 I 0.000
Traes_5DL_1CD573458 Triticum aestivum Traes_5DL_1CD573458 I 0.000
Traes_6BL_AEB13ECDE Triticum aestivum Traes_6BL_AEB13ECDE I 0.000
VIT_05s0020g04620 Vitis vinifera VIT_05s0020g04620 N 0.000
VIT_07s0141g00220 Vitis vinifera VIT_07s0141g00220 N 0.000
VIT_14s0030g02230 Vitis vinifera VIT_14s0030g02230 N 0.000