CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

A4F248_TOBAC *(Nicotiana tabacum)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	A4F248_TOBAC	T006659_2.00	HughesLab (2013-Jun-13)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.858	0.960
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.780	0.860
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.780	0.860
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.780	0.860
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.767	0.820
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.760	0.820
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.760	0.820
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.760	0.820
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.752	0.780
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.726	0.760
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.726	0.760
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.721	0.740
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.718	0.760
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.718	0.760
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.715	0.760
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.715	0.760
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.715	0.760
ERF115 M06657_2.00	Arabidopsis thaliana	CCGCCGYMRYHDCCR	YGGHDRYKRCGGCGG	Dap-seq OMalley et al.(2016) ERF115_col_a	0.703	0.780
ERF115 M06658_2.00	Arabidopsis thaliana	CKCCGCCGYMRYHDY	RHDRYKRCGGCGGMG	Dap-seq OMalley et al.(2016) ERF115_colamp_a	0.703	0.780
RAP2-6 M00717_2.00	Arabidopsis thaliana	NBGCYGNH	DNCRGCVN	PBM Chang et al.(2013) pTH7225	0.698	0.820
RAP2-6 M00841_2.00	Arabidopsis thaliana	NGCCGHHNNN	NNNDDCGGCN	PBM Franco-Zorrilla et al.(2014) RAP2.6	0.698	0.820
RAP2-6 M06579_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYMD	HKRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) RAP26_col_a	0.698	0.820
RAP2-6 M06580_2.00	Arabidopsis thaliana	CGCCGY	RCGGCG	Dap-seq OMalley et al.(2016) RAP26_colamp_a	0.698	0.820
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.696	0.720
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.692	0.760
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.688	0.740
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.688	0.740
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.688	0.740
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.687	0.740
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.687	0.740
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.687	0.740
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.685	0.720
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.683	0.680
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.683	0.720
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.683	0.720
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.682	0.720
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.682	0.720
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.682	0.720
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.681	0.740
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.681	0.740
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.681	0.740
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.681	0.740
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.680	0.720
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.678	0.680
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
A4F248_TOBAC	AP2	153	204	KNYRGVRQRPWGKWAAEIRDPRKAARVWLGTFNTAEDAARAYDKAAIEFRGP

Links
Other AP2 family TFs
Other *Nicotiana tabacum* TFs

1253 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACAC_0000427301	Angiostrongylus cantonensis	ACAC_0000427301	I	0.000
ALUE_0001098001	Ascaris lumbricoides	ALUE_0001098001	I	0.000
ANCCAN_15122	Ancylostoma caninum	ANCCAN_15122	I	0.000
ANCCEY_00087	Ancylostoma ceylanicum	ANCCEY_00087	I	0.000
ASU_06106	Ascaris suum	ASU_06106	I	0.000
Bm10487	Brugia malayi	Bm10487	I	0.000
BTMF_0001757301	Brugia timori	BTMF_0001757301	I	0.000
BXY_1612500	Bursaphelenchus xylophilus	BXY_1612500	I	0.000
CBG08158	Caenorhabditis briggsae	CBG08158	I	0.000
CBN30348	Caenorhabditis brenneri	CBN30348	I	0.000
CRE17142	Caenorhabditis remanei	CRE17142	I	0.000
D917_07770	Trichinella nativa	D917_07770	I	0.000
DICVIV_10692	Dictyocaulus viviparus	DICVIV_10692	I	0.000
EFV53318	Trichinella spiralis	EFV53318	I	0.000
Hba_12492	Heterorhabditis bacteriophora	Hba_12492	I	0.000
HCOI00400800	Haemonchus contortus	HCOI00400800	I	0.000
L596_g12501	Steinernema carpocapsae	L596_g12501	I	0.000
L889_g30058	Steinernema feltiae	L889_g30058	I	0.000
L892_g1322	Steinernema scapterisci	L892_g1322	I	0.000
L893_g22395	Steinernema glaseri	L893_g22395	I	0.000
L898_g26631	Steinernema monticolum	L898_g26631	I	0.000
maker-nMf.1.1.scaf08525-snap-gene-0.5	Meloidogyne floridensis	maker-nMf.1.1.scaf08525-snap-gene-0.5	I	0.000
MhA1_Contig575.frz3.gene2	Meloidogyne hapla	MhA1_Contig575.frz3.gene2	I	0.000
Minc12888	Meloidogyne incognita	Minc12888	I	0.000
NBR_0000708201	Nippostrongylus brasiliensis	NBR_0000708201	I	0.000
nLs.2.1.2.g09564	Litomosoides sigmodontis	nLs.2.1.2.g09564	I	0.000
nOo.2.0.1.g11672	Onchocerca ochengi	nOo.2.0.1.g11672	I	0.000
OESDEN_02446	Oesophagostomum dentatum	OESDEN_02446	I	0.000
PTRK_0000514200	Parastrongyloides trichosuri	PTRK_0000514200	I	0.000
RSKR_0000808100	Rhabditophanes kr3021	RSKR_0000808100	I	0.000
SBAD_0000510501	Soboliphyme baturini	SBAD_0000510501	I	0.000
scaffold28-EXSNAP2012.45	Pristionchus exspectatus	scaffold28-EXSNAP2012.45	I	0.000
SPAL_0001464000	Strongyloides papillosus	SPAL_0001464000	I	0.000
SSTP_0001056600	Strongyloides stercoralis	SSTP_0001056600	I	0.000
SVE_0630300	Strongyloides venezuelensis	SVE_0630300	I	0.000
SVUK_0001077701	Strongylus vulgaris	SVUK_0001077701	I	0.000
TCNE_0001118001	Toxocara canis	TCNE_0001118001	I	0.000
TELCIR_01774	Teladorsagia circumcincta	TELCIR_01774	I	0.000
TMUE_s0016009100	Trichuris muris	TMUE_s0016009100	I	0.000
TTRE_0000220801	Trichuris trichiura	TTRE_0000220801	I	0.000
B0310.2	Caenorhabditis elegans	WBGene00015138	D	0.000
WBGene00240779	Onchocerca volvulus	WBGene00240779	I	0.000
WUBG_01471	Wuchereria bancrofti	WUBG_01471	I	0.000

A4F248_TOBAC (Nicotiana tabacum) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1253 Related TFs

A4F248_TOBAC **(Nicotiana tabacum)
AP2**