CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cucsa.302750 *(Cucumis sativus)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Cucsa.302750	T007086_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
DREB1D M06678_2.00	Arabidopsis thaliana	NHBRCCGACRTNN	NNAYGTCGGYVDN	Dap-seq OMalley et al.(2016) CBF4_col_a	0.789	0.840
DREB1D M06679_2.00	Arabidopsis thaliana	HYRCCGACATND	HNATGTCGGYRD	Dap-seq OMalley et al.(2016) CBF4_colamp_a	0.789	0.840
DREB1C M01623_2.00	Arabidopsis thaliana	RCCGACAT	ATGTCGGY	PBM Weirauch et al.(2014) pTH8187	0.764	0.840
DREB1C M06639_2.00	Arabidopsis thaliana	NNNHBRCCGACATNN	NNATGTCGGYVDNNN	Dap-seq OMalley et al.(2016) CBF2_col_a	0.764	0.840
DREB1C M06640_2.00	Arabidopsis thaliana	NYBRCCGACATVN	NBATGTCGGYVRN	Dap-seq OMalley et al.(2016) CBF2_colamp_a	0.764	0.840
DREB1A M01624_2.00	Arabidopsis thaliana	NRCCGACNNN	NNNGTCGGYN	PBM Weirauch et al.(2014) pTH8163	0.742	0.820
DREB1A M01625_2.00	Arabidopsis thaliana	NNRCCGACNW	WNGTCGGYNN	PBM Weirauch et al.(2014) pTH9718	0.742	0.820
DREB1A M06641_2.00	Arabidopsis thaliana	HNYBRCCGACDWNN	NNWHGTCGGYVRND	Dap-seq OMalley et al.(2016) CBF3_col_a	0.742	0.820
DREB1A M06642_2.00	Arabidopsis thaliana	YBRCCGACATN	NATGTCGGYVR	Dap-seq OMalley et al.(2016) CBF3_colamp_a	0.742	0.820
DREB1F M00962_2.00	Arabidopsis thaliana	NRCCGACNN	NNGTCGGYN	PBM LehtiShiu et al.(2015) DDF1_Arabidopsis_thaliana	0.714	0.760
DREB1F M00840_2.00	Arabidopsis thaliana	NRYCGACNN	NNGTCGRYN	PBM Franco-Zorrilla et al.(2014) DDF1	0.714	0.760
DDF1 M00964_2.00	Arabidopsis lyrata	NRYCGACDY	RHGTCGRYN	PBM LehtiShiu et al.(2015) DDF1_Arabidopsis_lyrata	0.714	0.760
DREB1F M06564_2.00	Arabidopsis thaliana	NHNHYGYCGACATNN	NNATGTCGRCRDNDN	Dap-seq OMalley et al.(2016) DDF1_col_a	0.714	0.760
DREB1F M06565_2.00	Arabidopsis thaliana	HNDNNRYCGACAH	DTGTCGRYNNHND	Dap-seq OMalley et al.(2016) DDF1_colamp_a	0.714	0.760
DREB1F M09701_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREB1F_03	0.714	0.760
DREB1G M01635_2.00	Oryza sativa	NYGCCGACAN	NTGTCGGCRN	PBM Weirauch et al.(2014) pTH8352	0.688	0.720
DREB1G M09707_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREB1G_01	0.688	0.720
ddf2 M00965_2.00	Arabidopsis lyrata	NRYCGACAT	ATGTCGRYN	PBM LehtiShiu et al.(2015) DDF2_Arabidopsis_lyrata	0.686	0.720
DREB1B M06643_2.00	Arabidopsis thaliana	DHBRCCGACRHN	NDYGTCGGYVDH	Dap-seq OMalley et al.(2016) CBF1_col_a	0.679	0.820
DREB1B M06644_2.00	Arabidopsis thaliana	NNNHBRCCGACAWNN	NNWTGTCGGYVDNNN	Dap-seq OMalley et al.(2016) CBF1_colamp_a	0.679	0.820
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cucsa.302750.1	AP2	49	100	PVYRGVRQRNNDKWVCELREPNKKTRIWLGTYPTAEMAARAHDIAALALRGK

Links
Other AP2 family TFs
Other *Cucumis sativus* TFs

192 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIOSGA000702	Oryza indica	BGIOSGA000702	N
BGIOSGA020136	Oryza indica	BGIOSGA020136	N
Cla007849	Citrullus lanatus	Cla007849	N
Cucsa.147930	Cucumis sativus	Cucsa.147930	N
GSMUA_AchrUn_randomG13850_001	Musa acuminata	GSMUA_AchrUn_randomG13850_001	N
LPERR01G28620	Leersia perrieri	LPERR01G28620	N
LPERR05G17860	Leersia perrieri	LPERR05G17860	N
OB01G42000	Oryza brachyantha	OB01G42000	N
OBART01G33150	Oryza barthii	OBART01G33150	N
OBART05G21980	Oryza barthii	OBART05G21980	N
OGLUM01G37340	Oryza glumaepatula	OGLUM01G37340	N
OGLUM05G23150	Oryza glumaepatula	OGLUM05G23150	N
OLONG_014986	Oryza longistaminata	OLONG_014986	N
OMERI01G30050	Oryza meridionalis	OMERI01G30050	N
OMERI12G12270	Oryza meridionalis	OMERI12G12270	N
ONIVA01G37460	Oryza nivara	ONIVA01G37460	N
ONIVA05G22630	Oryza nivara	ONIVA05G22630	N
OPUNC05G19550	Oryza punctata	OPUNC05G19550	N
ORGLA01G0271200	Oryza glaberrima	ORGLA01G0271200	N
ORGLA05G0191400	Oryza glaberrima	ORGLA05G0191400	N
ORUFI01G36290	Oryza rufipogon	ORUFI01G36290	N
ORUFI05G23220	Oryza rufipogon	ORUFI05G23220	N
OS01G0780800	Oryza sativa	OS01G0780800	N
OS05G0502700	Oryza sativa	OS05G0502700	N
PGSC0003DMG400018322	Solanum tuberosum	PGSC0003DMG400018322	N
Solyc07g054450.2	Solanum lycopersicum	Solyc07g054450.2	N

Cucsa.302750 (Cucumis sativus) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

192 Related TFs

Cucsa.302750 **(Cucumis sativus)
AP2**