Bostr.13158s0163 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.13158s0163 T007566_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.688 0.640
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.688 0.640
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.688 0.640
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.679 0.760
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.679 0.760
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.679 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.13158s0163.1.p AP2 99 150

Links

Other AP2 family TFs
Other Boechera stricta TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF118 Arabidopsis thaliana AT1G68550 D 0.688
CRF5 Arabidopsis thaliana AT2G46310 I 0.716
CRF6 Arabidopsis thaliana AT3G61630 I 0.751
CRF4 Arabidopsis thaliana AT4G27950 D 0.679
Bo6g077880 Brassica oleracea Bo6g077880 I 0.762
Bo8g096140 Brassica oleracea Bo8g096140 I 0.681
Bostr.25993s0138 Boechera stricta Bostr.25993s0138 I 0.715
Bra003462 Brassica rapa Bra003462 I 0.762
Cagra.0050s0068 Capsella grandiflora Cagra.0050s0068 I 0.715
Cagra.0483s0087 Capsella grandiflora Cagra.0483s0087 I 0.802
Cagra.1225s0103 Capsella grandiflora Cagra.1225s0103 I 0.679
Carubv10005229m.g Capsella rubella Carubv10005229m.g I 0.679
Carubv10017705m.g Capsella rubella Carubv10017705m.g I 0.802
Carubv10023769m.g Capsella rubella Carubv10023769m.g I 0.715
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.682
CRF5 Arabidopsis lyrata fgenesh2_kg.4__2841__AT2G46310.1 I 0.723
CRF6 Arabidopsis lyrata fgenesh2_kg.5__2643__AT3G61630.1 I 0.761
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.689
GLYMA14G38610 Glycine max GLYMA14G38610 I 0.691
Gorai.001G156900 Gossypium raimondii Gorai.001G156900 I 0.685
Gorai.007G105600 Gossypium raimondii Gorai.007G105600 I 0.691
Gorai.007G105700 Gossypium raimondii Gorai.007G105700 I 0.691
LjSGA_008718.1 Lotus japonicus LjSGA_008718.1 I 0.678
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.682
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.682
PRUPE_ppa018978mg Prunus persica PRUPE_ppa018978mg N 0.692
CRF4 Arabidopsis lyrata scaffold_701473.1 I 0.680
TCM_005203 Theobroma cacao TCM_005203 I 0.691
Thhalv10001561m.g Eutrema salsugineum Thhalv10001561m.g I 0.712
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.681