CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bostr.15774s0346 *(Boechera stricta)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Bostr.15774s0346	T007581_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
DREB1D M06678_2.00	Arabidopsis thaliana	NHBRCCGACRTNN	NNAYGTCGGYVDN	Dap-seq OMalley et al.(2016) CBF4_col_a	0.839	1.000
DREB1D M06679_2.00	Arabidopsis thaliana	HYRCCGACATND	HNATGTCGGYRD	Dap-seq OMalley et al.(2016) CBF4_colamp_a	0.839	1.000
DREB1C M01623_2.00	Arabidopsis thaliana	RCCGACAT	ATGTCGGY	PBM Weirauch et al.(2014) pTH8187	0.800	0.920
DREB1C M06639_2.00	Arabidopsis thaliana	NNNHBRCCGACATNN	NNATGTCGGYVDNNN	Dap-seq OMalley et al.(2016) CBF2_col_a	0.800	0.920
DREB1C M06640_2.00	Arabidopsis thaliana	NYBRCCGACATVN	NBATGTCGGYVRN	Dap-seq OMalley et al.(2016) CBF2_colamp_a	0.800	0.920
DREB1A M01624_2.00	Arabidopsis thaliana	NRCCGACNNN	NNNGTCGGYN	PBM Weirauch et al.(2014) pTH8163	0.778	0.940
DREB1A M01625_2.00	Arabidopsis thaliana	NNRCCGACNW	WNGTCGGYNN	PBM Weirauch et al.(2014) pTH9718	0.778	0.940
DREB1A M06641_2.00	Arabidopsis thaliana	HNYBRCCGACDWNN	NNWHGTCGGYVRND	Dap-seq OMalley et al.(2016) CBF3_col_a	0.778	0.940
DREB1A M06642_2.00	Arabidopsis thaliana	YBRCCGACATN	NATGTCGGYVR	Dap-seq OMalley et al.(2016) CBF3_colamp_a	0.778	0.940
DREB1B M06643_2.00	Arabidopsis thaliana	DHBRCCGACRHN	NDYGTCGGYVDH	Dap-seq OMalley et al.(2016) CBF1_col_a	0.715	0.940
DREB1B M06644_2.00	Arabidopsis thaliana	NNNHBRCCGACAWNN	NNWTGTCGGYVDNNN	Dap-seq OMalley et al.(2016) CBF1_colamp_a	0.715	0.940
DREB1G M01635_2.00	Oryza sativa	NYGCCGACAN	NTGTCGGCRN	PBM Weirauch et al.(2014) pTH8352	0.714	0.800
DREB1G M09707_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREB1G_01	0.714	0.800
DREB1F M00962_2.00	Arabidopsis thaliana	NRCCGACNN	NNGTCGGYN	PBM LehtiShiu et al.(2015) DDF1_Arabidopsis_thaliana	0.701	0.760
DREB1F M00840_2.00	Arabidopsis thaliana	NRYCGACNN	NNGTCGRYN	PBM Franco-Zorrilla et al.(2014) DDF1	0.701	0.760
DDF1 M00964_2.00	Arabidopsis lyrata	NRYCGACDY	RHGTCGRYN	PBM LehtiShiu et al.(2015) DDF1_Arabidopsis_lyrata	0.701	0.760
DREB1F M06564_2.00	Arabidopsis thaliana	NHNHYGYCGACATNN	NNATGTCGRCRDNDN	Dap-seq OMalley et al.(2016) DDF1_col_a	0.701	0.760
DREB1F M06565_2.00	Arabidopsis thaliana	HNDNNRYCGACAH	DTGTCGRYNNHND	Dap-seq OMalley et al.(2016) DDF1_colamp_a	0.701	0.760
DREB1F M09701_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREB1F_03	0.701	0.760
DREB1E M09709_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREB1E_01	0.700	0.800
Q8S2T3_BRANA M09745_2.00	Brassica napus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CBF16_01	0.699	0.880
Q6T3U0_BRANA M09743_2.00	Brassica napus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREBII1_01	0.699	0.880
Q8S2T5_BRANA M09746_2.00	Brassica napus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CBF5_01	0.693	0.900
ddf2 M00965_2.00	Arabidopsis lyrata	NRYCGACAT	ATGTCGRYN	PBM LehtiShiu et al.(2015) DDF2_Arabidopsis_lyrata	0.678	0.760
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bostr.15774s0346.1.p	AP2	52	103	PIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGR

Links
Other AP2 family TFs
Other *Boechera stricta* TFs

216 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ANCCAN_11119	Ancylostoma caninum	ANCCAN_11119	N
ASU_08146	Ascaris suum	ASU_08146	N
Bm5461	Brugia malayi	Bm5461	N
CBG04528	Caenorhabditis briggsae	CBG04528	N
CBN10229	Caenorhabditis brenneri	CBN10229	N
CJA11562	Caenorhabditis japonica	CJA11562	N
CRE07418	Caenorhabditis remanei	CRE07418	N
D917_10060	Trichinella nativa	D917_10060	N
D918_09847	Trichuris suis	D918_09847	N
DME_0000703101	Dracunculus medinensis	DME_0000703101	N
EEL_0001032101	Elaeophora elaphi	EEL_0001032101	N
EFV59144	Trichinella spiralis	EFV59144	N
EVEC_0000343001	Enterobius vermicularis	EVEC_0000343001	N
genemark-nMf.1.1.scaf00700-processed-gene-0.2	Meloidogyne floridensis	genemark-nMf.1.1.scaf00700-processed-gene-0.2	N
HCOI01126400	Haemonchus contortus	HCOI01126400	N
HPLM_0001514901	Haemonchus placei	HPLM_0001514901	N
L892_g27509	Steinernema scapterisci	L892_g27509	N
L893_g31084	Steinernema glaseri	L893_g31084	N
L898_g31322	Steinernema monticolum	L898_g31322	N
LOAG_18975	Loa loa	LOAG_18975	N
MhA1_Contig775.frz3.gene10	Meloidogyne hapla	MhA1_Contig775.frz3.gene10	N
nDi.2.2.2.g04953	Dirofilaria immitis	nDi.2.2.2.g04953	N
nLs.2.1.2.g07513	Litomosoides sigmodontis	nLs.2.1.2.g07513	N
nOo.2.0.1.g02662	Onchocerca ochengi	nOo.2.0.1.g02662	N
PTRK_0000738400	Parastrongyloides trichosuri	PTRK_0000738400	N
RSKR_0000834400	Rhabditophanes kr3021	RSKR_0000834400	N
scaffold10-EXSNAP2012.60	Pristionchus exspectatus	scaffold10-EXSNAP2012.60	N
SMUV_0000352701	Syphacia muris	SMUV_0000352701	N
SSTP_0000853200	Strongyloides stercoralis	SSTP_0000853200	N
SVE_0358800	Strongyloides venezuelensis	SVE_0358800	N
TCLT_0000738501	Thelazia callipaeda	TCLT_0000738501	N
TTRE_0000470901	Trichuris trichiura	TTRE_0000470901	N
WBGene00242326	Onchocerca volvulus	WBGene00242326	N

Bostr.15774s0346 (Boechera stricta) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

216 Related TFs

Bostr.15774s0346 **(Boechera stricta)
AP2**