CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bostr.7867s1298 *(Boechera stricta)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Bostr.7867s1298	T007672_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.848	1.000
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.848	1.000
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.848	1.000
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.760	0.837
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.760	0.837
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.731	0.796
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.731	0.796
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.723	0.796
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.723	0.796
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.722	0.816
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.713	0.776
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.713	0.776
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.713	0.776
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.709	0.755
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.703	0.755
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.691	0.735
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.691	0.735
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.691	0.735
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.688	0.714
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.677	0.755
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bostr.7867s1298.1.p	AP2	136	187	NGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGP

Links
Other AP2 family TFs
Other *Boechera stricta* TFs

626 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aan_R012851	Calypte anna	Aan_R012851	I	0.000
Afo_R006429	Aptenodytes forsteri	Afo_R006429	I	0.000
A_01406	Schistosoma haematobium	A_01406	I	0.000
A_01907	Schistosoma haematobium	A_01907	N	0.000
CRE08474	Caenorhabditis remanei	CRE08474	N	0.000
CRE31308	Caenorhabditis remanei	CRE31308	N	0.000
csin105615	Clonorchis sinensis	csin105615	I	0.000
ECPE_0000936301	Echinostoma caproni	ECPE_0000936301	N	0.000
EmuJ_000217500	Echinococcus multilocularis	EmuJ_000217500	N	0.000
ENSGMOG00000017852	Gadus morhua	ENSGMOG00000017852	I	0.000
HDID_0000136701	Hymenolepis diminuta	HDID_0000136701	N	0.000
HmN_000727400	Hymenolepis microstoma	HmN_000727400	N	0.000
MCOS_0000774901	Mesocestoides corti	MCOS_0000774901	N	0.000
Smp_098780	Schistosoma mansoni	Smp_098780	N	0.000
SMRZ_0002246801	Schistosoma margrebowiei	SMRZ_0002246801	N	0.000
SROB_0001069101	Schistosoma rodhaini	SROB_0001069101	N	0.000
T265_08863	Opisthorchis viverrini	T265_08863	I	0.000
Tal_R007079	Tyto alba	Tal_R007079	I	0.000
TASK_0000624801	Taenia asiatica	TASK_0000624801	N	0.000
TsM_001176500	Taenia solium	TsM_001176500	N	0.000
TTAC_0000041401	Hydatigera taeniaeformis	TTAC_0000041401	N	0.000

Bostr.7867s1298 (Boechera stricta) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

626 Related TFs

Bostr.7867s1298 **(Boechera stricta)
AP2**