Ciclev10027171m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10027171m.g T008063_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.687 0.725
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.687 0.725
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.683 0.706
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.683 0.706
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.678 0.706
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10027171m AP2 166 217

Links

Other AP2 family TFs
Other Citrus clementina TFs

219 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27446.m000475 Ricinus communis 27446.m000475 I 0.854
27904.m000217 Ricinus communis 27904.m000217 I 0.689
29983.m003147 Ricinus communis 29983.m003147 I 0.682
30190.m011321 Ricinus communis 30190.m011321 I 0.693
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I 0.851
AMTR_s00115p00032780 Amborella trichopoda AMTR_s00115p00032780 I 0.681
Aquca_036_00070 Aquilegia coerulea Aquca_036_00070 I 0.693
ERF084 Arabidopsis thaliana AT1G80580 N 0.837
ERF9 Arabidopsis thaliana AT5G44210 D 0.687
BGIOSGA004611 Oryza indica BGIOSGA004611 I 0.692
BGIOSGA017796 Oryza indica BGIOSGA017796 I 0.691
BGIOSGA019608 Oryza indica BGIOSGA019608 N 0.713
Bo1g108970 Brassica oleracea Bo1g108970 I 0.677
Bo2g095830 Brassica oleracea Bo2g095830 N 0.785
Bo2g122260 Brassica oleracea Bo2g122260 I 0.684
Bo3g066710 Brassica oleracea Bo3g066710 I 0.684
Bo3g074840 Brassica oleracea Bo3g074840 I 0.686
Bostr.19424s0625 Boechera stricta Bostr.19424s0625 I 0.677
Bostr.20129s0456 Boechera stricta Bostr.20129s0456 N 0.837
Bostr.28625s0184 Boechera stricta Bostr.28625s0184 I 0.684
Bostr.3148s0037 Boechera stricta Bostr.3148s0037 I 0.687
Bra001588 Brassica rapa Bra001588 I 0.684
Bra001784 Brassica rapa Bra001784 I 0.686
Bra006325 Brassica rapa Bra006325 I 0.680
Bra008460 Brassica rapa Bra008460 N 0.827
Bra015266 Brassica rapa Bra015266 I 0.689
Bra036016 Brassica rapa Bra036016 I 0.684
Bra038261 Brassica rapa Bra038261 I 0.677
BRADI2G21060 Brachypodium distachyon BRADI2G21060 I 0.688
BRADI2G52370 Brachypodium distachyon BRADI2G52370 I 0.679
BRADI3G18070 Brachypodium distachyon BRADI3G18070 I 0.719
Cagra.0316s0033 Capsella grandiflora Cagra.0316s0033 I 0.677
Cagra.0381s0006 Capsella grandiflora Cagra.0381s0006 I 0.685
Cagra.1725s0082 Capsella grandiflora Cagra.1725s0082 N 0.837
Carubv10014475m.g Capsella rubella Carubv10014475m.g I 0.677
Carubv10014552m.g Capsella rubella Carubv10014552m.g I 0.678
Carubv10022119m.g Capsella rubella Carubv10022119m.g N 0.837
Carubv10027246m.g Capsella rubella Carubv10027246m.g I 0.685
cassava1589.valid.m1 Manihot esculenta cassava1589.valid.m1 I 0.684
cassava20937.m1 Manihot esculenta cassava20937.m1 I 0.693
cassava2923.m1 Manihot esculenta cassava2923.m1 N 0.682
cassava37846.valid.m1 Manihot esculenta cassava37846.valid.m1 I 0.692
cassava38416.m1 Manihot esculenta cassava38416.m1 I 0.854
cassava46560.m1 Manihot esculenta cassava46560.m1 I 0.685
Ca_00327 Cicer arietinum Ca_00327 I 0.682
Ca_11261 Cicer arietinum Ca_11261 I 0.693
Ca_20041 Cicer arietinum Ca_20041 I 0.852
Ca_20544 Cicer arietinum Ca_20544 I 0.694
Ca_22534 Cicer arietinum Ca_22534 I 0.694
chr6.CM0114.120.nc Lotus japonicus chr6.CM0114.120.nc I 0.682
Ciclev10009484m.g Citrus clementina Ciclev10009484m.g I 0.689
Ciclev10016276m.g Citrus clementina Ciclev10016276m.g I 0.696
Ciclev10016463m.g Citrus clementina Ciclev10016463m.g I 0.693
Cla002268 Citrullus lanatus Cla002268 I 0.687
Cla015583 Citrullus lanatus Cla015583 I 0.861
Cla020000 Citrullus lanatus Cla020000 I 0.695
Cucsa.046390 Cucumis sativus Cucsa.046390 I 0.680
Cucsa.105790 Cucumis sativus Cucsa.105790 I 0.861
Cucsa.126880 Cucumis sativus Cucsa.126880 I 0.698
Cucsa.195660 Cucumis sativus Cucsa.195660 I 0.687
ERF4_TOBAC Nicotiana tabacum ERF4_TOBAC D 0.678
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I 0.682
Eucgr.F03941 Eucalyptus grandis Eucgr.F03941 N 0.837
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I 0.862
evm.TU.supercontig_131.83 Carica papaya evm.TU.supercontig_131.83 I 0.689
evm.TU.supercontig_27.16 Carica papaya evm.TU.supercontig_27.16 I 0.693
evm.TU.supercontig_83.80 Carica papaya evm.TU.supercontig_83.80 I 0.682
e_gw1.14.213.1 Physcomitrella patens e_gw1.14.213.1 N 0.766
e_gw1.145.79.1 Physcomitrella patens e_gw1.145.79.1 N 0.764
e_gw1.15.234.1 Physcomitrella patens e_gw1.15.234.1 N 0.769
e_gw1.276.69.1 Physcomitrella patens e_gw1.276.69.1 N 0.753
fgenesh1_pg.scaffold_23000002 Physcomitrella patens fgenesh1_pg.scaffold_23000002 I 0.796
fgenesh1_pm.C_scaffold_2001935 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001935 N 0.837
ERF9 Arabidopsis lyrata fgenesh2_kg.8__388__AT5G44210.1 I 0.687
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I 0.866
gene29738-v1.0-hybrid Fragaria vesca gene29738-v1.0-hybrid I 0.693
GLYMA06G35710 Glycine max GLYMA06G35710 I 0.681
GLYMA07G03041 Glycine max GLYMA07G03041 I 0.852
GLYMA08G23074 Glycine max GLYMA08G23074 I 0.859
GLYMA08G43300 Glycine max GLYMA08G43300 I 0.692
GLYMA12G26836 Glycine max GLYMA12G26836 I 0.689
GLYMA12G35550 Glycine max GLYMA12G35550 I 0.681
GLYMA13G30990 Glycine max GLYMA13G30990 I 0.691
GLYMA13G34920 Glycine max GLYMA13G34920 I 0.681
GLYMA15G08370 Glycine max GLYMA15G08370 I 0.691
GLYMA18G10290 Glycine max GLYMA18G10290 I 0.692
Gorai.002G067600 Gossypium raimondii Gorai.002G067600 I 0.691
Gorai.005G200200 Gossypium raimondii Gorai.005G200200 I 0.691
Gorai.006G088000 Gossypium raimondii Gorai.006G088000 I 0.693
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I 0.853
Gorai.009G125700 Gossypium raimondii Gorai.009G125700 N 0.842
Gorai.009G375700 Gossypium raimondii Gorai.009G375700 I 0.689
Gorai.010G155900 Gossypium raimondii Gorai.010G155900 I 0.693
Gorai.010G256600 Gossypium raimondii Gorai.010G256600 I 0.684
Gorai.011G029800 Gossypium raimondii Gorai.011G029800 I 0.689
GRMZM2G132185 Zea mays GRMZM2G132185 I 0.679
GRMZM2G310368 Zea mays GRMZM2G310368 I 0.681
GSMUA_Achr1G25890_001 Musa acuminata GSMUA_Achr1G25890_001 I 0.724
GSMUA_Achr4G23620_001 Musa acuminata GSMUA_Achr4G23620_001 I 0.697
GSMUA_Achr4G33270_001 Musa acuminata GSMUA_Achr4G33270_001 I 0.699
GSMUA_Achr6G00250_001 Musa acuminata GSMUA_Achr6G00250_001 I 0.699
GSMUA_Achr7G00350_001 Musa acuminata GSMUA_Achr7G00350_001 I 0.686
GSMUA_Achr7G03640_001 Musa acuminata GSMUA_Achr7G03640_001 I 0.698
GSMUA_Achr8G03550_001 Musa acuminata GSMUA_Achr8G03550_001 I 0.692
GSMUA_Achr8G33590_001 Musa acuminata GSMUA_Achr8G33590_001 I 0.683
GSMUA_Achr9G11480_001 Musa acuminata GSMUA_Achr9G11480_001 I 0.688
GSMUA_AchrUn_randomG16100_001 Musa acuminata GSMUA_AchrUn_randomG16100_001 I 0.698
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N 0.802
gw1.340.39.1 Physcomitrella patens gw1.340.39.1 N 0.749
LPERR01G29260 Leersia perrieri LPERR01G29260 I 0.692
LPERR03G32900 Leersia perrieri LPERR03G32900 I 0.677
LPERR05G17480 Leersia perrieri LPERR05G17480 I 0.691
Lus10014345.g Linum usitatissimum Lus10014345.g N 0.813
Lus10015415.g Linum usitatissimum Lus10015415.g I 0.693
Lus10026053.g Linum usitatissimum Lus10026053.g N 0.805
Lus10039857.g Linum usitatissimum Lus10039857.g I 0.677
MDP0000264187 Malus domestica MDP0000264187 I 0.874
MDP0000324718 Malus domestica MDP0000324718 I 0.677
mgf019214m Mimulus guttatus mgf019214m I 0.691
mgf023662m Mimulus guttatus mgf023662m I 0.862
MLOC_24530 Hordeum vulgare MLOC_24530 I 0.683
MLOC_73358 Hordeum vulgare MLOC_73358 I 0.688
MTR_2g014340 Medicago truncatula MTR_2g014340 I 0.687
MTR_2g078680 Medicago truncatula MTR_2g078680 I 0.682
MTR_4g009260 Medicago truncatula MTR_4g009260 I 0.877
MTR_4g078710 Medicago truncatula MTR_4g078710 I 0.680
OB01G42720 Oryza brachyantha OB01G42720 I 0.691
OBART01G33870 Oryza barthii OBART01G33870 I 0.692
OBART05G21580 Oryza barthii OBART05G21580 I 0.691
OGLUM01G38110 Oryza glumaepatula OGLUM01G38110 I 0.692
OGLUM05G22790 Oryza glumaepatula OGLUM05G22790 I 0.691
OLONG_021733 Oryza longistaminata OLONG_021733 I 0.692
OMERI01G30710 Oryza meridionalis OMERI01G30710 I 0.692
OMERI05G10040 Oryza meridionalis OMERI05G10040 N 0.713
OMERI05G19490 Oryza meridionalis OMERI05G19490 I 0.691
ONIVA01G38670 Oryza nivara ONIVA01G38670 I 0.692
ONIVA05G11840 Oryza nivara ONIVA05G11840 N 0.713
ONIVA05G22270 Oryza nivara ONIVA05G22270 I 0.691
OPUNC01G32930 Oryza punctata OPUNC01G32930 I 0.692
OPUNC05G19230 Oryza punctata OPUNC05G19230 I 0.691
orange1.1g026240m.g Citrus sinensis orange1.1g026240m.g I 0.693
orange1.1g028454m.g Citrus sinensis orange1.1g028454m.g I 0.689
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I 0.877
ORGLA01G0278100 Oryza glaberrima ORGLA01G0278100 I 0.692
ORGLA05G0187600 Oryza glaberrima ORGLA05G0187600 I 0.691
ORUFI01G37120 Oryza rufipogon ORUFI01G37120 I 0.692
ORUFI05G12300 Oryza rufipogon ORUFI05G12300 N 0.713
ORUFI05G22850 Oryza rufipogon ORUFI05G22850 I 0.691
OS01G0797600 Oryza sativa OS01G0797600 I 0.692
OS05G0316800 Oryza sativa OS05G0316800 N 0.713
OS05G0497300 Oryza sativa OS05G0497300 I 0.691
Pavir.Ca01358 Panicum virgatum Pavir.Ca01358 I 0.688
Pavir.Ea03147 Panicum virgatum Pavir.Ea03147 I 0.692
Pavir.Eb03458 Panicum virgatum Pavir.Eb03458 I 0.692
Pavir.Fa01728 Panicum virgatum Pavir.Fa01728 I 0.682
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I 0.705
Pavir.Fb00951 Panicum virgatum Pavir.Fb00951 I 0.682
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I 0.704
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I 0.704
Pavir.J14354 Panicum virgatum Pavir.J14354 I 0.690
PGSC0003DMG400000091 Solanum tuberosum PGSC0003DMG400000091 I 0.705
PGSC0003DMG400010135 Solanum tuberosum PGSC0003DMG400010135 N 0.806
PGSC0003DMG400012828 Solanum tuberosum PGSC0003DMG400012828 I 0.701
PGSC0003DMG400013744 Solanum tuberosum PGSC0003DMG400013744 I 0.686
PGSC0003DMG400026821 Solanum tuberosum PGSC0003DMG400026821 I 0.678
PGSC0003DMG400028853 Solanum tuberosum PGSC0003DMG400028853 I 0.678
PGSC0003DMG401013892 Solanum tuberosum PGSC0003DMG401013892 I 0.681
PGSC0003DMG402013892 Solanum tuberosum PGSC0003DMG402013892 I 0.681
PK02602.1 Cannabis sativa PK02602.1 I 0.684
PK19363.1 Cannabis sativa PK19363.1 D 0.683
Pm011391 Prunus mume Pm011391 I 0.678
Pm013734 Prunus mume Pm013734 I 0.874
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I 0.854
POPTR_0001s40770 Populus trichocarpa POPTR_0001s40770 I 0.690
POPTR_0004s04720 Populus trichocarpa POPTR_0004s04720 I 0.687
POPTR_0011s05580 Populus trichocarpa POPTR_0011s05580 I 0.696
POPTR_0011s11620 Populus trichocarpa POPTR_0011s11620 I 0.690
POPTR_0013s15440 Populus trichocarpa POPTR_0013s15440 I 0.729
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I 0.849
PRUPE_ppa010090mg Prunus persica PRUPE_ppa010090mg I 0.682
PRUPE_ppa010982mg Prunus persica PRUPE_ppa010982mg I 0.678
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I 0.868
Q84LQ6_SOLLC Solanum lycopersicum Q84LQ6_SOLLC I 0.680
Q84XB1_SOLLC Solanum lycopersicum Q84XB1_SOLLC I 0.680
SapurV1A.0012s0580 Salix purpurea SapurV1A.0012s0580 I 0.687
SapurV1A.0032s0470 Salix purpurea SapurV1A.0032s0470 I 0.686
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I 0.854
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I 0.843
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I 0.682
SapurV1A.1325s0040 Salix purpurea SapurV1A.1325s0040 I 0.690
SapurV1A.2062s0030 Salix purpurea SapurV1A.2062s0030 I 0.696
SapurV1A.3143s0020 Salix purpurea SapurV1A.3143s0020 I 0.686
Sb03g037080 Sorghum bicolor Sb03g037080 I 0.688
Sb09g024400 Sorghum bicolor Sb09g024400 I 0.683
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N 0.807
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N 0.807
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N 0.804
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N 0.804
Si002729m.g Setaria italica Si002729m.g I 0.692
Si023088m.g Setaria italica Si023088m.g I 0.690
Solyc01g095500.2 Solanum lycopersicum Solyc01g095500.2 I 0.711
Solyc03g117230.1 Solanum lycopersicum Solyc03g117230.1 N 0.842
Solyc07g053740.1 Solanum lycopersicum Solyc07g053740.1 I 0.687
Solyc10g009110.1 Solanum lycopersicum Solyc10g009110.1 I 0.680
Solyc12g005960.1 Solanum lycopersicum Solyc12g005960.1 I 0.681
Solyc12g049560.1 Solanum lycopersicum Solyc12g049560.1 I 0.678
TCM_008162 Theobroma cacao TCM_008162 I 0.687
TCM_027348 Theobroma cacao TCM_027348 I 0.855
TCM_029820 Theobroma cacao TCM_029820 I 0.684
TCM_031608 Theobroma cacao TCM_031608 I 0.689
Thhalv10000556m.g Eutrema salsugineum Thhalv10000556m.g N 0.833
Thhalv10003431m.g Eutrema salsugineum Thhalv10003431m.g I 0.693
Thhalv10019474m.g Eutrema salsugineum Thhalv10019474m.g N 0.833
Thhalv10021456m.g Eutrema salsugineum Thhalv10021456m.g I 0.678
TRAES3BF075600050CFD_g Triticum aestivum TRAES3BF075600050CFD_g I 0.683
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I 0.862
VIT_10s0003g00140 Vitis vinifera VIT_10s0003g00140 I 0.682
VIT_12s0028g03270 Vitis vinifera VIT_12s0028g03270 I 0.691
VIT_19s0014g02240 Vitis vinifera VIT_19s0014g02240 I 0.689