gene13118-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene13118-v1.0-hybrid T008395_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRF2
M01622_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8680 		0.821 0.880
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.810 0.840
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.804 0.840
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.804 0.840
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.804 0.840
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.773 0.760
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.767 0.760
ERF069
M01604_2.00 		Arabidopsis thaliana
NNGCCGNNN
NNNCGGCNN		 PBM
Weirauch et al.(2014)
pTH7550 		0.756 0.800
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.738 0.720
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.737 0.740
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.737 0.740
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.737 0.740
ERF091
M06638_2.00 		Arabidopsis thaliana
NNHNYHDCCGCCGCCRY
RYGGCGGCGGHDRNDNN		 Dap-seq
OMalley et al.(2016)
AT4G18450_col_a 		0.722 0.720
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.717 0.700
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.717 0.700
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.717 0.700
ERF5_TOBAC
M09729_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF4_02 		0.716 0.700
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.715 0.700
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.712 0.660
ERF105
M01632_2.00 		Arabidopsis thaliana
CGCCGGCM
KGCCGGCG		 PBM
Weirauch et al.(2014)
pTH7233 		0.709 0.740
ERF105
M06676_2.00 		Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN		 Dap-seq
OMalley et al.(2016)
ERF105_colamp_a 		0.709 0.740
ERF105
M06677_2.00 		Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF105_col 		0.709 0.740
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.709 0.680
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.709 0.680
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.709 0.680
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.709 0.700
Q7Y1W2_TOBAC
M09735_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CEF1_01 		0.707 0.680
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.705 0.700
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.705 0.700
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.705 0.720
ERF10
M06562_2.00 		Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN
NRYGGCGGCGRHDDNDNNDNN		 Dap-seq
OMalley et al.(2016)
ERF10_col_a 		0.704 0.640
ERF10
M06563_2.00 		Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN
NNNNNNHDDYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF10_colamp_a 		0.704 0.640
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.704 0.660
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.704 0.660
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.699 0.680
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.697 0.700
Q84J59_MAIZE
M09717_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BD1_01 		0.697 0.600
EREBP1
M09708_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EREBP1_01 		0.696 0.680
Q5Y836_TOBAC
M09732_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF5_02 		0.696 0.660
ERF096
M01630_2.00 		Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN		 PBM
Weirauch et al.(2014)
pTH7909 		0.695 0.680
ERF086
M06663_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYHD
HDRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
PUCHI_col_a 		0.693 0.620
ERF086
M06664_2.00 		Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN
NNNDHDDHDRCGGCGGMGDHDNNNN		 Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a 		0.693 0.620
RAP2-12
M01046_2.00 		Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY		 PBM
Sullivan et al.(2014)
pTH7359 		0.690 0.660
RAP2-12
M06588_2.00 		Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN		 Dap-seq
OMalley et al.(2016)
RAP212_col_a 		0.690 0.660
ERF104
M06682_2.00 		Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN		 Dap-seq
OMalley et al.(2016)
ERF104_col_a 		0.689 0.660
ERF104
M06683_2.00 		Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV		 Dap-seq
OMalley et al.(2016)
ERF104_colamp_a 		0.689 0.660
LEP
M06661_2.00 		Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH
DDNDRHDDHDRCGGCGGMGVN		 Dap-seq
OMalley et al.(2016)
LEP_col_a 		0.686 0.640
0100010458
M01644_2.00 		Ostreococcus tauri
MGCCGSCR
YGSCGGCK		 PBM
Weirauch et al.(2014)
pTH9447 		0.684 0.680
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.684 0.720
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.684 0.720
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.683 0.640
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.683 0.640
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.682 0.680
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.682 0.680
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.682 0.680
ERF1B
M01619_2.00 		Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN		 PBM
Weirauch et al.(2014)
pTH8795 		0.677 0.620
ERF1B
M06626_2.00 		Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF1_col_a 		0.677 0.620
ERF1B
M06627_2.00 		Arabidopsis thaliana
MGCCGCCD
HGGCGGCK		 Dap-seq
OMalley et al.(2016)
ERF1_colamp_a 		0.677 0.620
ERF1B
M09703_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2_01 		0.677 0.620
ERF1B
M09704_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2 		0.677 0.620
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna13118.1-v1.0-hybrid AP2 123 174

Links

Other AP2 family TFs
Other Fragaria vesca TFs

1829 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27763.m000042 Ricinus communis 27763.m000042 I 0.000
30128.m008730 Ricinus communis 30128.m008730 I 0.000
Aquca_015_00085 Aquilegia coerulea Aquca_015_00085 I 0.000
Aquca_015_00088 Aquilegia coerulea Aquca_015_00088 I 0.000
Aquca_047_00006 Aquilegia coerulea Aquca_047_00006 I 0.000
MYB75 Arabidopsis thaliana AT1G56650 I 0.000
MYB113 Arabidopsis thaliana AT1G66370 D 0.000
MYB114 Arabidopsis thaliana AT1G66380 I 0.000
MYB90 Arabidopsis thaliana AT1G66390 I 0.000
Bo00835s060 Brassica oleracea Bo00835s060 I 0.000
Bo6g099880 Brassica oleracea Bo6g099880 I 0.000
Bo6g100940 Brassica oleracea Bo6g100940 I 0.000
Bostr.26959s0279 Boechera stricta Bostr.26959s0279 I 0.000
Bra001917 Brassica rapa Bra001917 I 0.000
Bra004162 Brassica rapa Bra004162 I 0.000
Bra039763 Brassica rapa Bra039763 I 0.000
Cagra.0463s0006 Capsella grandiflora Cagra.0463s0006 I 0.000
Cagra.0463s0007 Capsella grandiflora Cagra.0463s0007 I 0.000
Cagra.0463s0008 Capsella grandiflora Cagra.0463s0008 I 0.000
Cagra.2400s0001 Capsella grandiflora Cagra.2400s0001 I 0.000
Cagra.2629s0007 Capsella grandiflora Cagra.2629s0007 I 0.000
Carubv10020856m.g Capsella rubella Carubv10020856m.g I 0.000
Carubv10020888m.g Capsella rubella Carubv10020888m.g I 0.000
Ca_19630 Cicer arietinum Ca_19630 I 0.000
Ca_22078 Cicer arietinum Ca_22078 I 0.000
chr1.CM0141.350.nd Lotus japonicus chr1.CM0141.350.nd I 0.000
chr1.LjT44L17.240.nd Lotus japonicus chr1.LjT44L17.240.nd I 0.000
Ciclev10013455m.g Citrus clementina Ciclev10013455m.g I 0.000
Cucsa.277570 Cucumis sativus Cucsa.277570 I 0.000
Eucgr.F02842 Eucalyptus grandis Eucgr.F02842 I 0.000
Eucgr.H04157 Eucalyptus grandis Eucgr.H04157 I 0.000
Eucgr.J01553 Eucalyptus grandis Eucgr.J01553 I 0.000
Eucgr.J01569 Eucalyptus grandis Eucgr.J01569 I 0.000
Eucgr.J01576 Eucalyptus grandis Eucgr.J01576 I 0.000
Eucgr.J01578 Eucalyptus grandis Eucgr.J01578 I 0.000
Eucgr.J01580 Eucalyptus grandis Eucgr.J01580 I 0.000
Eucgr.J01586 Eucalyptus grandis Eucgr.J01586 I 0.000
evm.TU.contig_42663.2 Carica papaya evm.TU.contig_42663.2 I 0.000
evm.TU.supercontig_116.38 Carica papaya evm.TU.supercontig_116.38 I 0.000
evm.TU.supercontig_2742.1 Carica papaya evm.TU.supercontig_2742.1 I 0.000
evm.TU.supercontig_51.67 Carica papaya evm.TU.supercontig_51.67 I 0.000
fgenesh1_pg.C_scaffold_2000950 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000950 I 0.000
PAP1 Arabidopsis lyrata fgenesh2_kg.1__4777__AT1G56650.1 I 0.000
MYB113 Arabidopsis lyrata fgenesh2_kg.2__869__AT1G66370.1 I 0.000
gene31413-v1.0-hybrid Fragaria vesca gene31413-v1.0-hybrid I 0.000
GLYMA07G16980 Glycine max GLYMA07G16980 I 0.000
GLYMA09G36966 Glycine max GLYMA09G36966 I 0.000
GLYMA09G37010 Glycine max GLYMA09G37010 I 0.000
GLYMA18G41520 Glycine max GLYMA18G41520 I 0.000
GLYMA18G49690 Glycine max GLYMA18G49690 I 0.000
GLYMA19G02980 Glycine max GLYMA19G02980 I 0.000
Gorai.001G087200 Gossypium raimondii Gorai.001G087200 I 0.000
Gorai.001G087400 Gossypium raimondii Gorai.001G087400 I 0.000
Gorai.007G268800 Gossypium raimondii Gorai.007G268800 I 0.000
Gorai.013G118300 Gossypium raimondii Gorai.013G118300 I 0.000
Lus10009129.g Linum usitatissimum Lus10009129.g I 0.000
Lus10009130.g Linum usitatissimum Lus10009130.g I 0.000
Lus10028513.g Linum usitatissimum Lus10028513.g I 0.000
Lus10028514.g Linum usitatissimum Lus10028514.g I 0.000
Lus10042522.g Linum usitatissimum Lus10042522.g I 0.000
MDP0000192051 Malus domestica MDP0000192051 I 0.000
mgf019317m Mimulus guttatus mgf019317m I 0.000
mgf022565m Mimulus guttatus mgf022565m I 0.000
MTR_0001s0360 Medicago truncatula MTR_0001s0360 I 0.000
MTR_0197s0010 Medicago truncatula MTR_0197s0010 I 0.000
MTR_5g078800 Medicago truncatula MTR_5g078800 I 0.000
MTR_5g078860 Medicago truncatula MTR_5g078860 I 0.000
MTR_5g078910 Medicago truncatula MTR_5g078910 I 0.000
MTR_5g078930 Medicago truncatula MTR_5g078930 I 0.000
MTR_5g078950 Medicago truncatula MTR_5g078950 I 0.000
MTR_5g079120 Medicago truncatula MTR_5g079120 I 0.000
MTR_5g079220 Medicago truncatula MTR_5g079220 I 0.000
MTR_5g079290 Medicago truncatula MTR_5g079290 I 0.000
MTR_7g017260 Medicago truncatula MTR_7g017260 I 0.000
MTR_8g060940 Medicago truncatula MTR_8g060940 I 0.000
PDK_20s1447601g001 Phoenix dactylifera PDK_20s1447601g001 I 0.000
PK05760.1 Cannabis sativa PK05760.1 I 0.000
PK17827.1 Cannabis sativa PK17827.1 I 0.000
Pm025429 Prunus mume Pm025429 I 0.000
Pm029440 Prunus mume Pm029440 I 0.000
Pm029442 Prunus mume Pm029442 I 0.000
Pm029445 Prunus mume Pm029445 I 0.000
Pm031337 Prunus mume Pm031337 I 0.000
POPTR_0005s14450 Populus trichocarpa POPTR_0005s14450 I 0.000
PRUPE_ppa010069mg Prunus persica PRUPE_ppa010069mg I 0.000
PRUPE_ppa016711mg Prunus persica PRUPE_ppa016711mg I 0.000
PRUPE_ppa020385mg Prunus persica PRUPE_ppa020385mg I 0.000
PRUPE_ppa026640mg Prunus persica PRUPE_ppa026640mg I 0.000
scaffold_201356.1 Arabidopsis lyrata scaffold_201356.1 I 0.000
scaffold_201357.1 Arabidopsis lyrata scaffold_201357.1 I 0.000
ATMYB90 Arabidopsis lyrata scaffold_201358.1 I 0.000
Solyc10g086250.1 Solanum lycopersicum Solyc10g086250.1 I 0.000
Solyc10g086260.1 Solanum lycopersicum Solyc10g086260.1 I 0.000
Solyc10g086270.1 Solanum lycopersicum Solyc10g086270.1 I 0.000
Solyc10g086290.1 Solanum lycopersicum Solyc10g086290.1 I 0.000
TCM_019192 Theobroma cacao TCM_019192 I 0.000
TCM_026054 Theobroma cacao TCM_026054 I 0.000
Thhalv10019041m.g Eutrema salsugineum Thhalv10019041m.g I 0.000
VIT_02s0033g00390 Vitis vinifera VIT_02s0033g00390 I 0.000
VIT_02s0033g00410 Vitis vinifera VIT_02s0033g00410 I 0.000
VIT_02s0033g00430 Vitis vinifera VIT_02s0033g00430 I 0.000
VIT_02s0033g00450 Vitis vinifera VIT_02s0033g00450 I 0.000
VIT_14s0006g01280 Vitis vinifera VIT_14s0006g01280 I 0.000
VIT_14s0006g01290 Vitis vinifera VIT_14s0006g01290 I 0.000
VIT_14s0006g01340 Vitis vinifera VIT_14s0006g01340 I 0.000