Lus10019665.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10019665.g T008828_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.833 0.920
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.826 0.920
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.826 0.920
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.716 0.880
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.716 0.880
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.700 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10019665 AP2 67 118

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

450 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA004705 Oryza indica BGIOSGA004705 I 0.000
BGIOSGA017556 Oryza indica BGIOSGA017556 I 0.000
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.000
BGIOSGA023706 Oryza indica BGIOSGA023706 I 0.000
BGIOSGA030113 Oryza indica BGIOSGA030113 I 0.000
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.000
BGIOSGA034612 Oryza indica BGIOSGA034612 I 0.000
BGIOSGA034613 Oryza indica BGIOSGA034613 N 0.000
BGIOSGA036756 Oryza indica BGIOSGA036756 N 0.000
BGIOSGA036757 Oryza indica BGIOSGA036757 N 0.000
Bo4g012750 Brassica oleracea Bo4g012750 I 0.000
BRADI2G53520 Brachypodium distachyon BRADI2G53520 I 0.000
BRADI4G44350 Brachypodium distachyon BRADI4G44350 I 0.000
BRADI4G44360 Brachypodium distachyon BRADI4G44360 I 0.000
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N 0.000
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.000
F775_00757 Aegilops tauschii F775_00757 I 0.000
F775_02479 Aegilops tauschii F775_02479 N 0.000
F775_02480 Aegilops tauschii F775_02480 N 0.000
F775_04232 Aegilops tauschii F775_04232 N 0.000
GRMZM2G030272 Zea mays GRMZM2G030272 N 0.000
GRMZM2G400559 Zea mays GRMZM2G400559 N 0.000
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.000
LPERR01G30490 Leersia perrieri LPERR01G30490 I 0.000
LPERR05G06630 Leersia perrieri LPERR05G06630 I 0.000
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.000
LPERR07G23280 Leersia perrieri LPERR07G23280 I 0.000
LPERR11G00960 Leersia perrieri LPERR11G00960 I 0.000
LPERR11G00970 Leersia perrieri LPERR11G00970 N 0.000
LPERR12G01070 Leersia perrieri LPERR12G01070 I 0.000
LPERR12G01080 Leersia perrieri LPERR12G01080 N 0.000
MLOC_78461 Hordeum vulgare MLOC_78461 I 0.000
OB05G17240 Oryza brachyantha OB05G17240 I 0.000
OB07G31890 Oryza brachyantha OB07G31890 I 0.000
OB11G10760 Oryza brachyantha OB11G10760 N 0.000
OB12G11030 Oryza brachyantha OB12G11030 N 0.000
OBART01G35380 Oryza barthii OBART01G35380 I 0.000
OBART05G08130 Oryza barthii OBART05G08130 I 0.000
OBART05G20340 Oryza barthii OBART05G20340 I 0.000
OBART07G26430 Oryza barthii OBART07G26430 I 0.000
OBART11G01100 Oryza barthii OBART11G01100 N 0.000
OBART11G01110 Oryza barthii OBART11G01110 I 0.000
OBART12G00850 Oryza barthii OBART12G00850 N 0.000
OGLUM01G39390 Oryza glumaepatula OGLUM01G39390 I 0.000
OGLUM05G08540 Oryza glumaepatula OGLUM05G08540 I 0.000
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.000
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.000
OGLUM07G26470 Oryza glumaepatula OGLUM07G26470 I 0.000
OGLUM11G00850 Oryza glumaepatula OGLUM11G00850 I 0.000
OGLUM11G00870 Oryza glumaepatula OGLUM11G00870 I 0.000
OGLUM12G01400 Oryza glumaepatula OGLUM12G01400 N 0.000
OLONG_000636 Oryza longistaminata OLONG_000636 I 0.000
OLONG_002978 Oryza longistaminata OLONG_002978 I 0.000
OLONG_008209 Oryza longistaminata OLONG_008209 I 0.000
OLONG_019907 Oryza longistaminata OLONG_019907 I 0.000
OMERI01G32510 Oryza meridionalis OMERI01G32510 I 0.000
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.000
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.000
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.000
OMERI07G23060 Oryza meridionalis OMERI07G23060 I 0.000
OMERI11G01520 Oryza meridionalis OMERI11G01520 N 0.000
OMERI11G01570 Oryza meridionalis OMERI11G01570 N 0.000
ONIVA01G40390 Oryza nivara ONIVA01G40390 I 0.000
ONIVA05G08650 Oryza nivara ONIVA05G08650 I 0.000
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.000
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.000
ONIVA07G26140 Oryza nivara ONIVA07G26140 I 0.000
ONIVA09G03360 Oryza nivara ONIVA09G03360 I 0.000
ONIVA11G01050 Oryza nivara ONIVA11G01050 N 0.000
ONIVA11G01230 Oryza nivara ONIVA11G01230 N 0.000
ONIVA11G01240 Oryza nivara ONIVA11G01240 I 0.000
OPUNC05G07410 Oryza punctata OPUNC05G07410 I 0.000
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.000
OPUNC07G24890 Oryza punctata OPUNC07G24890 I 0.000
OPUNC11G00970 Oryza punctata OPUNC11G00970 N 0.000
OPUNC11G00980 Oryza punctata OPUNC11G00980 N 0.000
OPUNC12G00970 Oryza punctata OPUNC12G00970 N 0.000
OPUNC12G00990 Oryza punctata OPUNC12G00990 N 0.000
ORGLA01G0292200 Oryza glaberrima ORGLA01G0292200 I 0.000
ORGLA05G0070000 Oryza glaberrima ORGLA05G0070000 I 0.000
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.000
ORGLA07G0207800 Oryza glaberrima ORGLA07G0207800 I 0.000
ORGLA11G0201900 Oryza glaberrima ORGLA11G0201900 N 0.000
ORGLA11G0202000 Oryza glaberrima ORGLA11G0202000 I 0.000
ORGLA12G0007500 Oryza glaberrima ORGLA12G0007500 N 0.000
ORGLA12G0007600 Oryza glaberrima ORGLA12G0007600 N 0.000
ORUFI01G38690 Oryza rufipogon ORUFI01G38690 I 0.000
ORUFI05G08750 Oryza rufipogon ORUFI05G08750 I 0.000
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.000
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.000
ORUFI07G27440 Oryza rufipogon ORUFI07G27440 I 0.000
OS01G0821600 Oryza sativa OS01G0821600 I 0.000
OS05G0478400 Oryza sativa OS05G0478400 I 0.000
OS05G0478800 Oryza sativa OS05G0478800 I 0.000
OS07G0680400 Oryza sativa OS07G0680400 I 0.000
OS11G0117400 Oryza sativa OS11G0117400 N 0.000
OS11G0117500 Oryza sativa OS11G0117500 N 0.000
OS12G0116600 Oryza sativa OS12G0116600 N 0.000
OS12G0116700 Oryza sativa OS12G0116700 N 0.000
Pavir.Ba00227 Panicum virgatum Pavir.Ba00227 I 0.000
Pavir.Ca00084 Panicum virgatum Pavir.Ca00084 N 0.000
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I 0.000
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I 0.000
Pavir.Ea03258 Panicum virgatum Pavir.Ea03258 I 0.000
Pavir.Eb03563 Panicum virgatum Pavir.Eb03563 I 0.000
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I 0.000
Pavir.Ib01500 Panicum virgatum Pavir.Ib01500 N 0.000
Pavir.J09582 Panicum virgatum Pavir.J09582 N 0.000
Pavir.J34713 Panicum virgatum Pavir.J34713 N 0.000
Pavir.J39511 Panicum virgatum Pavir.J39511 I 0.000
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I 0.000
Sb01g036870 Sorghum bicolor Sb01g036870 N 0.000
Sb05g001180 Sorghum bicolor Sb05g001180 N 0.000
Sb05g001200 Sorghum bicolor Sb05g001200 N 0.000
Sb05g001220 Sorghum bicolor Sb05g001220 N 0.000
Sb08g002560 Sorghum bicolor Sb08g002560 N 0.000
Sb08g002570 Sorghum bicolor Sb08g002570 N 0.000
Si002401m.g Setaria italica Si002401m.g I 0.000
Si010764m.g Setaria italica Si010764m.g N 0.000
Si010832m.g Setaria italica Si010832m.g N 0.000
Si019098m.g Setaria italica Si019098m.g N 0.000
Si025181m.g Setaria italica Si025181m.g I 0.000
Si027360m.g Setaria italica Si027360m.g N 0.000
Si027876m.g Setaria italica Si027876m.g N 0.000
Si028202m.g Setaria italica Si028202m.g I 0.000
Si030395m.g Setaria italica Si030395m.g I 0.000
Si039519m.g Setaria italica Si039519m.g N 0.000
Traes_5AL_69A969FF4 Triticum aestivum Traes_5AL_69A969FF4 N 0.000
TRIUR3_01445 Triticum urartu TRIUR3_01445 N 0.000
TRIUR3_01447 Triticum urartu TRIUR3_01447 N 0.000
TRIUR3_14306 Triticum urartu TRIUR3_14306 I 0.000
TRIUR3_26571 Triticum urartu TRIUR3_26571 N 0.000