Lus10031526.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10031526.g T008878_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF3
M01607_2.00 		Arabidopsis thaliana
CGCCGSCR
YGSCGGCG		 PBM
Weirauch et al.(2014)
pTH8109 		0.686 0.766
ERF3
M06584_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
ERF3_col_a 		0.686 0.766
ERF3
M06585_2.00 		Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN		 Dap-seq
OMalley et al.(2016)
ERF3_colamp_a 		0.686 0.766
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10031526 AP2 27 78

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29640.m000403 Ricinus communis 29640.m000403 I 0.737
AMTR_s00002p00264660 Amborella trichopoda AMTR_s00002p00264660 I 0.682
Aquca_027_00311 Aquilegia coerulea Aquca_027_00311 I 0.764
ERF3 Arabidopsis thaliana AT1G50640 D 0.686
BGIOSGA005557 Oryza indica BGIOSGA005557 I 0.684
BGIOSGA029071 Oryza indica BGIOSGA029071 I 0.688
Bo6g022410 Brassica oleracea Bo6g022410 I 0.722
Bo7g040820 Brassica oleracea Bo7g040820 I 0.682
Bostr.26675s0388 Boechera stricta Bostr.26675s0388 I 0.686
Bra014924 Brassica rapa Bra014924 I 0.682
Bra018864 Brassica rapa Bra018864 I 0.681
BRADI2G21067 Brachypodium distachyon BRADI2G21067 I 0.711
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I 0.688
Cagra.0952s0001 Capsella grandiflora Cagra.0952s0001 I 0.687
Carubv10010284m.g Capsella rubella Carubv10010284m.g I 0.687
cassava34729.m1 Manihot esculenta cassava34729.m1 I 0.729
cassava43266.valid.m1 Manihot esculenta cassava43266.valid.m1 I 0.732
cassava6588.valid.m1 Manihot esculenta cassava6588.valid.m1 I 0.692
Ca_17824 Cicer arietinum Ca_17824 I 0.700
chr2.LjT24P12.30.nd Lotus japonicus chr2.LjT24P12.30.nd I 0.763
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.696
Ciclev10009361m.g Citrus clementina Ciclev10009361m.g I 0.746
Ciclev10016668m.g Citrus clementina Ciclev10016668m.g I 0.756
Ciclev10026032m.g Citrus clementina Ciclev10026032m.g I 0.682
Cla003319 Citrullus lanatus Cla003319 I 0.749
Cla005423 Citrullus lanatus Cla005423 I 0.756
Cla013723 Citrullus lanatus Cla013723 I 0.703
Cucsa.042770 Cucumis sativus Cucsa.042770 I 0.758
Cucsa.139820 Cucumis sativus Cucsa.139820 I 0.696
Cucsa.190200 Cucumis sativus Cucsa.190200 I 0.749
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.684
estExt_gwp_gw1.C_1270048 Physcomitrella patens estExt_gwp_gw1.C_1270048 I 0.678
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.727
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.677
evm.TU.supercontig_12.251 Carica papaya evm.TU.supercontig_12.251 I 0.753
evm.TU.supercontig_132.31 Carica papaya evm.TU.supercontig_132.31 I 0.774
e_gw1.124.59.1 Physcomitrella patens e_gw1.124.59.1 I 0.679
e_gw1.487.2.1 Physcomitrella patens e_gw1.487.2.1 I 0.683
fgenesh2_kg.3__2537__AT3G23220.1 Arabidopsis lyrata fgenesh2_kg.3__2537__AT3G23220.1 I 0.692
gene01152-v1.0-hybrid Fragaria vesca gene01152-v1.0-hybrid I 0.754
gene03450-v1.0-hybrid Fragaria vesca gene03450-v1.0-hybrid I 0.685
GLYMA02G43500 Glycine max GLYMA02G43500 I 0.751
GLYMA02G46340 Glycine max GLYMA02G46340 I 0.693
GLYMA03G31640 Glycine max GLYMA03G31640 I 0.682
GLYMA06G44430 Glycine max GLYMA06G44430 I 0.703
GLYMA12G13315 Glycine max GLYMA12G13315 I 0.695
GLYMA14G02360 Glycine max GLYMA14G02360 I 0.686
GLYMA14G05470 Glycine max GLYMA14G05470 I 0.751
Gorai.002G092900 Gossypium raimondii Gorai.002G092900 I 0.683
Gorai.004G032500 Gossypium raimondii Gorai.004G032500 I 0.680
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I 0.700
Gorai.009G443400 Gossypium raimondii Gorai.009G443400 I 0.715
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I 0.712
GRMZM2G020150 Zea mays GRMZM2G020150 I 0.686
GRMZM2G079653 Zea mays GRMZM2G079653 I 0.689
GRMZM2G146028 Zea mays GRMZM2G146028 I 0.687
GRMZM2G174347 Zea mays GRMZM2G174347 I 0.684
GRMZM2G175525 Zea mays GRMZM2G175525 I 0.677
GSMUA_Achr1G18230_001 Musa acuminata GSMUA_Achr1G18230_001 I 0.769
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I 0.724
GSMUA_Achr3G29290_001 Musa acuminata GSMUA_Achr3G29290_001 I 0.678
GSMUA_Achr4G04060_001 Musa acuminata GSMUA_Achr4G04060_001 I 0.743
GSMUA_Achr4G06170_001 Musa acuminata GSMUA_Achr4G06170_001 I 0.780
GSMUA_Achr4G06660_001 Musa acuminata GSMUA_Achr4G06660_001 I 0.678
GSMUA_Achr4G11430_001 Musa acuminata GSMUA_Achr4G11430_001 I 0.759
GSMUA_Achr5G09940_001 Musa acuminata GSMUA_Achr5G09940_001 I 0.678
GSMUA_AchrUn_randomG06910_001 Musa acuminata GSMUA_AchrUn_randomG06910_001 I 0.698
gw1.90.191.1 Physcomitrella patens gw1.90.191.1 I 0.681
LPERR02G05920 Leersia perrieri LPERR02G05920 I 0.691
LPERR02G27530 Leersia perrieri LPERR02G27530 I 0.683
LPERR08G14810 Leersia perrieri LPERR08G14810 I 0.687
Lus10029987.g Linum usitatissimum Lus10029987.g I 0.789
Lus10035329.g Linum usitatissimum Lus10035329.g I 0.789
Lus10043182.g Linum usitatissimum Lus10043182.g I 0.687
MDP0000236605 Malus domestica MDP0000236605 I 0.695
MDP0000243113 Malus domestica MDP0000243113 I 0.719
MDP0000310904 Malus domestica MDP0000310904 I 0.695
MDP0000457509 Malus domestica MDP0000457509 I 0.694
MDP0000542633 Malus domestica MDP0000542633 I 0.740
MDP0000629527 Malus domestica MDP0000629527 I 0.740
MDP0000744693 Malus domestica MDP0000744693 I 0.719
MDP0000839828 Malus domestica MDP0000839828 I 0.754
mgf007166m Mimulus guttatus mgf007166m I 0.754
mgf016282m Mimulus guttatus mgf016282m I 0.754
MLOC_10878 Hordeum vulgare MLOC_10878 I 0.688
MTR_5g085070 Medicago truncatula MTR_5g085070 I 0.696
MTR_5g085100 Medicago truncatula MTR_5g085100 I 0.712
OBART02G33690 Oryza barthii OBART02G33690 I 0.684
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I 0.696
OGLUM02G34120 Oryza glumaepatula OGLUM02G34120 I 0.684
OMERI02G07840 Oryza meridionalis OMERI02G07840 I 0.696
OMERI02G32080 Oryza meridionalis OMERI02G32080 I 0.684
OMERI08G16840 Oryza meridionalis OMERI08G16840 I 0.688
ONIVA02G33420 Oryza nivara ONIVA02G33420 I 0.684
OPUNC02G05940 Oryza punctata OPUNC02G05940 I 0.691
OPUNC02G31100 Oryza punctata OPUNC02G31100 I 0.693
orange1.1g027990m.g Citrus sinensis orange1.1g027990m.g I 0.756
orange1.1g039390m.g Citrus sinensis orange1.1g039390m.g I 0.682
orange1.1g045783m.g Citrus sinensis orange1.1g045783m.g I 0.746
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I 0.696
ORGLA02G0291300 Oryza glaberrima ORGLA02G0291300 I 0.684
ORGLA08G0225800 Oryza glaberrima ORGLA08G0225800 I 0.688
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I 0.696
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I 0.687
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I 0.687
Pavir.J03216 Panicum virgatum Pavir.J03216 I 0.697
Pavir.J28880 Panicum virgatum Pavir.J28880 I 0.686
Pavir.J32690 Panicum virgatum Pavir.J32690 I 0.695
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I 0.679
PGSC0003DMG400014417 Solanum tuberosum PGSC0003DMG400014417 I 0.734
PGSC0003DMG400022305 Solanum tuberosum PGSC0003DMG400022305 I 0.738
PK23186.1 Cannabis sativa PK23186.1 I 0.682
PK25211.1 Cannabis sativa PK25211.1 I 0.748
Pm011907 Prunus mume Pm011907 I 0.740
Pm014953 Prunus mume Pm014953 I 0.754
POPTR_0001s36610 Populus trichocarpa POPTR_0001s36610 I 0.751
POPTR_0007s11080 Populus trichocarpa POPTR_0007s11080 I 0.689
PRUPE_ppa010804mg Prunus persica PRUPE_ppa010804mg I 0.754
PRUPE_ppa010893mg Prunus persica PRUPE_ppa010893mg I 0.740
SapurV1A.0126s0320 Salix purpurea SapurV1A.0126s0320 I 0.750
SapurV1A.0126s0330 Salix purpurea SapurV1A.0126s0330 I 0.750
SapurV1A.0711s0020 Salix purpurea SapurV1A.0711s0020 I 0.677
Sb04g006080 Sorghum bicolor Sb04g006080 I 0.687
Sb07g025843 Sorghum bicolor Sb07g025843 I 0.690
Sb08g004260 Sorghum bicolor Sb08g004260 I 0.685
SELMODRAFT_131245 Selaginella moellendorffii SELMODRAFT_131245 I 0.698
SELMODRAFT_28277 Selaginella moellendorffii SELMODRAFT_28277 I 0.698
Si018144m.g Setaria italica Si018144m.g I 0.698
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I 0.684
Solyc07g064890.1 Solanum lycopersicum Solyc07g064890.1 I 0.747
Solyc10g006130.1 Solanum lycopersicum Solyc10g006130.1 I 0.743
TCM_030804 Theobroma cacao TCM_030804 I 0.711
Thhalv10011689m.g Eutrema salsugineum Thhalv10011689m.g I 0.694
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I 0.695
VIT_07s0141g00690 Vitis vinifera VIT_07s0141g00690 I 0.678
VIT_12s0059g01460 Vitis vinifera VIT_12s0059g01460 I 0.756
VIT_19s0090g01080 Vitis vinifera VIT_19s0090g01080 I 0.703