Pavir.Bb01980 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Bb01980 T009380_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.851 0.960
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.838 0.940
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.838 0.940
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.722 0.860
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.722 0.860
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.685 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb01980.1.p AP2 92 143

Links

Other AP2 family TFs
Other Panicum virgatum TFs

449 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008070 Calypte anna Aan_R008070 I
ENSAMEG00000019654 Ailuropoda melanoleuca ENSAMEG00000019654 I
ZBTB43 Bos taurus ENSBTAG00000003438 I
ENSBTAP00000004465-D1 Bos grunniens ENSBTAP00000004465-D1 I
ZBTB43 Callithrix jacchus ENSCJAG00000017939 I
ENSCSAG00000019711 Chlorocebus sabaeus ENSCSAG00000019711 I
ZBTB43 Dasypus novemcinctus ENSDNOG00000032194 I
ENSDORG00000001810 Dipodomys ordii ENSDORG00000001810 I
ZBTB43 Equus caballus ENSECAG00000013239 I
ZBTB43 Erinaceus europaeus ENSEEUG00000009258 I
ZBTB43 Echinops telfairi ENSETEG00000000019 I
ZBTB43 Felis catus ENSFCAG00000031874 I
ZBTB43 Homo sapiens ENSG00000169155 D
ZBTB43 Gorilla gorilla ENSGGOG00000017180 I
ZBTB43 Loxodonta africana ENSLAFG00000011314 I
ZBTB43 Myotis lucifugus ENSMLUG00000010893 I
ZBTB43 Macaca mulatta ENSMMUG00000013640 I
ENSMPUG00000019227 Mustela putorius furo ENSMPUG00000019227 I
Zbtb43 Mus musculus ENSMUSG00000026788 I
ENSNLEG00000017415 Nomascus leucogenys ENSNLEG00000017415 I
ENSOARG00000012600 Ovis aries ENSOARG00000012600 I
ZBTB43 Oryctolagus cuniculus ENSOCUG00000009799 I
ZBTB43 Otolemur garnettii ENSOGAG00000002029 I
ZBTB43 Ochotona princeps ENSOPRG00000011453 I
ENSPANG00000000295 Papio anubis ENSPANG00000000295 I
ZBTB43 Procavia capensis ENSPCAG00000006897 I
ENSPPYG00000019615 Pongo abelii ENSPPYG00000019615 I
ZBTB43 Pan troglodytes ENSPTRG00000021378 I
ZBTB43 Pteropus vampyrus ENSPVAG00000017706 I
Zbtb43 Rattus norvegicus ENSRNOG00000017017 I
ZBTB43 Sorex araneus ENSSARG00000013849 I
ENSSSCG00000029288 Sus scrofa ENSSSCG00000029288 I
ENSSTOG00000007435 Ictidomys tridecemlineatus ENSSTOG00000007435 I
ZBTB43 Tursiops truncatus ENSTTRG00000009614 I