CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.Ga01099 *(Panicum virgatum)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Pavir.Ga01099	T009470_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.832	0.939
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.832	0.939
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.815	0.918
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.815	0.918
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.815	0.918
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.795	0.918
A5JTT1_WHEAT M09700_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_01	0.779	0.959
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.746	0.776
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.736	0.816
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.730	0.816
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.730	0.816
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.730	0.816
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.727	0.755
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.725	0.796
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.725	0.755
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.725	0.755
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.725	0.755
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.725	0.755
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.716	0.776
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.716	0.776
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.716	0.776
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.716	0.755
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.716	0.755
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.716	0.755
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.710	0.694
ERF13 M01615_2.00	Arabidopsis thaliana	VGCCGSCD	HGSCGGCB	PBM Weirauch et al.(2014) pTH7283	0.706	0.776
ERF13 M06612_2.00	Arabidopsis thaliana	NHDBMGCCGCCDYHD	HDRHGGCGGCKVHDN	Dap-seq OMalley et al.(2016) ERF13_colamp_a	0.706	0.776
ERF13 M06613_2.00	Arabidopsis thaliana	HDBMGCCGCCDYHDN	NHDRHGGCGGCKVHD	Dap-seq OMalley et al.(2016) ERF13_col_b	0.706	0.776
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.702	0.735
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.702	0.735
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.700	0.673
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.698	0.796
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.694	0.735
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.694	0.735
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.694	0.714
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.694	0.714
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.694	0.714
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.693	0.735
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.689	0.694
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.689	0.694
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.688	0.694
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.687	0.714
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.683	0.673
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.682	0.796
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.682	0.796
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.682	0.796
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.682	0.796
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.682	0.796
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.681	0.714
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.Ga01099.1.p	AP2	139	191	KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYDTAEDAALAYDRAAYRMRGS

Links
Other AP2 family TFs
Other *Panicum virgatum* TFs

1457 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL012662	Aedes aegypti	AAEL012662	I
AALB000262	Anopheles albimanus	AALB000262	I
AARA009464	Anopheles arabiensis	AARA009464	I
AATE002862	Anopheles atroparvus	AATE002862	I
ACHR010105	Anopheles christyi	ACHR010105	I
ACOM040689	Anopheles coluzzii	ACOM040689	I
ACUA018540	Anopheles culicifacies	ACUA018540	I
ACYPI000273	Acyrthosiphon pisum	ACYPI000273	I
ADIR000678	Anopheles dirus	ADIR000678	I
AEPI003166	Anopheles epiroticus	AEPI003166	I
AFAF012456	Anopheles farauti	AFAF012456	I
AFUN009249	Anopheles funestus	AFUN009249	I
AGAP028176	Anopheles gambiae	AGAP028176	I
AMEC020491	Anopheles melas	AMEC020491	I
AMEM000284	Anopheles merus	AMEM000284	I
AMIN001682	Anopheles minimus	AMIN001682	I
AQUA011502	Anopheles quadriannulatus	AQUA011502	I
ASIS012186	Anopheles sinensis	ASIS012186	I
ASTEI01901	Anopheles stephensi	ASTEI01901	I
BGIBMGA007303	Bombyx mori	BGIBMGA007303	I
BGLB006797	Biomphalaria glabrata	BGLB006797	I
CapteG206308	Capitella teleta	CapteG206308	I
Cflo_05077--XP_624468.1_APIME	Camponotus floridanus	Cflo_05077--XP_624468.1_APIME	I
Cflo_09823--XP_001121050.1_APIME	Camponotus floridanus	Cflo_09823--XP_001121050.1_APIME	I
CGI_10020332	Crassostrea gigas	CGI_10020332	I
CLEC008492	Cimex lectularius	CLEC008492	I
CLEC012303	Cimex lectularius	CLEC012303	I
CPIJ010025	Culex quinquefasciatus	CPIJ010025	I
CpipJ_CPIJ010025	Culex pipiens	CpipJ_CPIJ010025	I
estExt_fgenesh2_pg.C_2400032	Branchiostoma floridae	estExt_fgenesh2_pg.C_2400032	I
dimm	Drosophila melanogaster	FBgn0023091	D
GA21247	Drosophila pseudoobscura	FBgn0081235	I
GF14327	Drosophila ananassae	FBgn0091354	I
GG21298	Drosophila erecta	FBgn0113477	I
GH13314	Drosophila grimshawi	FBgn0120790	I
GI12220	Drosophila mojavensis	FBgn0134977	I
GL26661	Drosophila persimilis	FBgn0164242	I
GD24318	Drosophila simulans	FBgn0195665	I
GJ17849	Drosophila virilis	FBgn0205017	I
GK18738	Drosophila willistoni	FBgn0220736	I
GE12913	Drosophila yakuba	FBgn0230628	I
GB44356	Apis mellifera	GB44356	I
GB47718	Apis mellifera	GB47718	I
HelroG148428	Helobdella robusta	HelroG148428	N
HHAL006119-PA	Halyomorpha halys	HHAL006119-PA	I
HMEL004962	Heliconius melpomene	HMEL004962	I
Hsal_02552--XP_001121050.1_APIME	Harpegnathos saltator	Hsal_02552--XP_001121050.1_APIME	I
Hsal_06132--XP_001121050.1_APIME	Harpegnathos saltator	Hsal_06132--XP_001121050.1_APIME	I
KGM_17543	Danaus plexippus	KGM_17543	I
L798_11629	Zootermopsis nevadensis	L798_11629	I
L798_12706	Zootermopsis nevadensis	L798_12706	I
LCUP013558	Lucilia cuprina	LCUP013558	I
LDEC018804	Leptinotarsa decemlineata	LDEC018804	I
LotgiG98055	Lottia gigantea	LotgiG98055	I
MCINX009496	Melitaea cinxia	MCINX009496	I
MDOA007359	Musca domestica	MDOA007359	I
MESCA005415	Megaselia scalaris	MESCA005415	I
NV10548	Nasonia vitripennis	NV10548	I
NV21702	Nasonia vitripennis	NV21702	I
PHUM567140	Pediculus humanus	PHUM567140	I
RPRC000986	Rhodnius prolixus	RPRC000986	I
Sakowv30016776m.g	Saccoglossus kowalevskii	Sakowv30016776m.g	I
SINV24225	Solenopsis invicta	SINV24225	I
SMAR011224	Strigamia maritima	SMAR011224	I
TC006222	Tribolium castaneum	TC006222	I
tetur09g04370	Tetranychus urticae	tetur09g04370	I
YQE_07035	Dendroctonus ponderosae	YQE_07035	I

Pavir.Ga01099 (Panicum virgatum) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1457 Related TFs

Pavir.Ga01099 **(Panicum virgatum)
AP2**