ENSAMXG00000019435 (Astyanax mexicanus)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSAMXG00000019435 T014442_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.741 0.919
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.739 0.953
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.739 0.953
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.739 0.953
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.739 0.953
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.739 0.953
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.739 0.942
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.701 0.779
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.687 0.837
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.687 0.837
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.687 0.837
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.687 0.837
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.675 0.488
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.664 0.709
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.508 0.407
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.372
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMXP00000020013 ARID/BRIGHT 251 337

Links

Other ARID/BRIGHT family TFs
Other Astyanax mexicanus TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30055.m001589 Ricinus communis 30055.m001589 I 0.000
30131.m007263 Ricinus communis 30131.m007263 I 0.000
Aquca_004_00257 Aquilegia coerulea Aquca_004_00257 N 0.000
Aquca_072_00078 Aquilegia coerulea Aquca_072_00078 N 0.000
cassava42566.valid.m1 Manihot esculenta cassava42566.valid.m1 N 0.000
Ca_05454 Cicer arietinum Ca_05454 I 0.000
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I 0.000
Cla014242 Citrullus lanatus Cla014242 N 0.000
Cla020348 Citrullus lanatus Cla020348 I 0.000
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.000
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.000
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.000
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.000
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.000
Gorai.006G113100 Gossypium raimondii Gorai.006G113100 N 0.000
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.000
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.000
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.000
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.000
MDP0000289018 Malus domestica MDP0000289018 I 0.000
mgf009460m Mimulus guttatus mgf009460m I 0.000
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.000
orange1.1g026855m.g Citrus sinensis orange1.1g026855m.g N 0.000
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.000
PGSC0003DMG400007603 Solanum tuberosum PGSC0003DMG400007603 N 0.000
PGSC0003DMG400023495 Solanum tuberosum PGSC0003DMG400023495 N 0.000
PK13672.1 Cannabis sativa PK13672.1 I 0.000
Pm006046 Prunus mume Pm006046 I 0.000
Pm017050 Prunus mume Pm017050 I 0.000
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.000
SapurV1A.0450s0110 Salix purpurea SapurV1A.0450s0110 I 0.000
SapurV1A.1671s0040 Salix purpurea SapurV1A.1671s0040 I 0.000
Solyc05g055240.2 Solanum lycopersicum Solyc05g055240.2 N 0.000
Solyc11g006720.1 Solanum lycopersicum Solyc11g006720.1 N 0.000
TCM_041362 Theobroma cacao TCM_041362 N 0.000
VIT_06s0080g00790 Vitis vinifera VIT_06s0080g00790 I 0.000
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.000