ARID3C (Sus scrofa)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSSSCG00000010971 T014778_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.692 0.860
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.692 0.860
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.692 0.860
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.692 0.860
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.692 0.860
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.692 0.849
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.663 0.802
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.654 0.709
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.654 0.791
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.654 0.791
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.654 0.791
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.654 0.791
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.631 0.651
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.628 0.453
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.461 0.372
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.461 0.314
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000011700 ARID/BRIGHT 117 203
ENSSSCP00000019374 ARID/BRIGHT 117 203

Links

Other ARID/BRIGHT family TFs
Other Sus scrofa TFs

370 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA023694 Oryza indica BGIOSGA023694 I 0.000
Bra035746 Brassica rapa Bra035746 I 0.000
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I 0.000
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I 0.000
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I 0.000
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I 0.000
LPERR03G13760 Leersia perrieri LPERR03G13760 I 0.000
LPERR07G23570 Leersia perrieri LPERR07G23570 I 0.000
mgf012394m Mimulus guttatus mgf012394m I 0.000
MTR_5g087790 Medicago truncatula MTR_5g087790 I 0.000
OLONG_004360 Oryza longistaminata OLONG_004360 I 0.000
ONIVA07G26490 Oryza nivara ONIVA07G26490 I 0.000
ORGLA07G0211700 Oryza glaberrima ORGLA07G0211700 I 0.000
ORUFI07G27710 Oryza rufipogon ORUFI07G27710 I 0.000
OS07G0685700 Oryza sativa OS07G0685700 I 0.000
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I 0.000