Pavir.Ab03084 (Panicum virgatum)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Pavir.Ab03084 T016162_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.704 0.753
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.609 0.718
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab03084.1.p ARID/BRIGHT 186 271

Links

Other ARID/BRIGHT family TFs
Other Panicum virgatum TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R010039 Calypte anna Aan_R010039 I 0.000
Afo_R012751 Aptenodytes forsteri Afo_R012751 I 0.000
Cmyd_10018130 Chelonia mydas Cmyd_10018130 I 0.000
DICVIV_13476 Dictyocaulus viviparus DICVIV_13476 I 0.000
ENSACAG00000008631 Anolis carolinensis ENSACAG00000008631 I 0.000
ENSAMEG00000014907 Ailuropoda melanoleuca ENSAMEG00000014907 I 0.000
ENSBTAG00000045938 Bos taurus ENSBTAG00000045938 I 0.000
ENSBTAG00000046306 Bos taurus ENSBTAG00000046306 I 0.000
ENSBTAG00000047168 Bos taurus ENSBTAG00000047168 I 0.000
ENSCAFG00000023024 Canis familiaris ENSCAFG00000023024 I 0.000
ENSCAFG00000023067 Canis familiaris ENSCAFG00000023067 I 0.000
ENSCAFG00000029639 Canis familiaris ENSCAFG00000029639 I 0.000
ENSCPOG00000021607 Cavia porcellus ENSCPOG00000021607 I 0.000
ENSCSAG00000007182 Chlorocebus sabaeus ENSCSAG00000007182 I 0.000
ENSCSAG00000018308 Chlorocebus sabaeus ENSCSAG00000018308 I 0.000
ENSDNOG00000015218 Dasypus novemcinctus ENSDNOG00000015218 I 0.000
ENSDNOG00000043873 Dasypus novemcinctus ENSDNOG00000043873 I 0.000
ENSDNOG00000045058 Dasypus novemcinctus ENSDNOG00000045058 I 0.000
ENSECAG00000000093 Equus caballus ENSECAG00000000093 I 0.000
ENSECAG00000008677 Equus caballus ENSECAG00000008677 I 0.000
ENSECAG00000008708 Equus caballus ENSECAG00000008708 I 0.000
ENSECAG00000009495 Equus caballus ENSECAG00000009495 I 0.000
ENSFCAG00000025614 Felis catus ENSFCAG00000025614 I 0.000
HSFY2 Homo sapiens ENSG00000169953 D 0.000
HSFX1 Homo sapiens ENSG00000171116 I 0.000
HSFY1 Homo sapiens ENSG00000172468 D 0.000
HSFX2 Homo sapiens ENSG00000268738 I 0.000
ENSGGOG00000024390 Gorilla gorilla ENSGGOG00000024390 I 0.000
ENSLACG00000012431 Latimeria chalumnae ENSLACG00000012431 I 0.000
ENSLOCG00000014483 Lepisosteus oculatus ENSLOCG00000014483 I 0.000
ENSMEUG00000003908 Macropus eugenii ENSMEUG00000003908 I 0.000
ENSMLUG00000015387 Myotis lucifugus ENSMLUG00000015387 I 0.000
ENSMLUG00000022730 Myotis lucifugus ENSMLUG00000022730 I 0.000
ENSMLUG00000024907 Myotis lucifugus ENSMLUG00000024907 I 0.000
ENSMLUG00000030480 Myotis lucifugus ENSMLUG00000030480 I 0.000
ENSMMUG00000002887 Macaca mulatta ENSMMUG00000002887 I 0.000
ENSMODG00000027398 Monodelphis domestica ENSMODG00000027398 I 0.000
ENSMODG00000028107 Monodelphis domestica ENSMODG00000028107 I 0.000
Hsfy2 Mus musculus ENSMUSG00000045336 I 0.000
ENSNLEG00000013483 Nomascus leucogenys ENSNLEG00000013483 I 0.000
ENSOANG00000001091 Ornithorhynchus anatinus ENSOANG00000001091 I 0.000
ENSOANG00000012192 Ornithorhynchus anatinus ENSOANG00000012192 I 0.000
ENSOANG00000028803 Ornithorhynchus anatinus ENSOANG00000028803 I 0.000
ENSP00000359444 Macaca fascicularis ENSP00000359444 I 0.000
ENSPANG00000004032 Papio anubis ENSPANG00000004032 I 0.000
ENSPFOG00000024243 Poecilia formosa ENSPFOG00000024243 I 0.000
ENSPVAG00000013816 Pteropus vampyrus ENSPVAG00000013816 N 0.000
Hsfy2 Rattus norvegicus ENSRNOG00000038569 I 0.000
ENSSSCG00000012734 Sus scrofa ENSSSCG00000012734 I 0.000
ENSSTOG00000025684 Ictidomys tridecemlineatus ENSSTOG00000025684 I 0.000
ENSTGUG00000006065 Taeniopygia guttata ENSTGUG00000006065 I 0.000
ENSTGUG00000006066 Taeniopygia guttata ENSTGUG00000006066 I 0.000
ENSVPAG00000003263 Vicugna pacos ENSVPAG00000003263 I 0.000
ENSVPAG00000003548 Vicugna pacos ENSVPAG00000003548 I 0.000
ENSVPAG00000004400 Vicugna pacos ENSVPAG00000004400 I 0.000
ENSVPAG00000004668 Vicugna pacos ENSVPAG00000004668 I 0.000
ENSVPAG00000004671 Vicugna pacos ENSVPAG00000004671 I 0.000
ENSVPAG00000005620 Vicugna pacos ENSVPAG00000005620 I 0.000
ENSVPAG00000007875 Vicugna pacos ENSVPAG00000007875 I 0.000
ENSVPAG00000007931 Vicugna pacos ENSVPAG00000007931 I 0.000
ENSVPAG00000010189 Vicugna pacos ENSVPAG00000010189 I 0.000
Gfo_R015012 Geospiza fortis Gfo_R015012 I 0.000
Myotis_brandtii_HSFY1_10020625 Myotis brandtii Myotis_brandtii_HSFY1_10020625 I 0.000
Ogr08578 Ophisaurus gracilis Ogr08578 I 0.000
Pvit_14501 Pogona vitticeps Pvit_14501 I 0.000
Tal_R002418 Tyto alba Tal_R002418 I 0.000
Tal_R003042 Tyto alba Tal_R003042 I 0.000