BPC5 (Arabidopsis thaliana)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 AT4G38910 T024521_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC5
M06717_2.00		 Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT		 Dap-seq
OMalley et al.(2016)
BPC5_col_a		 (Direct) (Direct)
BPC5
M06718_2.00		 Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTYTCTCYYNBYYYY		 Dap-seq
OMalley et al.(2016)
BPC5_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G38910.1 BBR 2 258
AT4G38910.2 BBR 1 283

Links

Other BBR family TFs
Other Arabidopsis thaliana TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00185p00053620 Amborella trichopoda AMTR_s00185p00053620 I 0.766
Bo1g002230 Brassica oleracea Bo1g002230 N 0.704
Bo3g149640 Brassica oleracea Bo3g149640 I 0.872
Bo7g119540 Brassica oleracea Bo7g119540 I 0.779
Bostr.25542s0071 Boechera stricta Bostr.25542s0071 I 0.870
Bostr.5022s0111 Boechera stricta Bostr.5022s0111 N 0.727
Bra010720 Brassica rapa Bra010720 N 0.719
Cagra.2961s0028 Capsella grandiflora Cagra.2961s0028 N 0.715
Carubv10023579m.g Capsella rubella Carubv10023579m.g N 0.715
BPC5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000068 I 0.774
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
scaffold_200704.1 Arabidopsis lyrata scaffold_200704.1 I 0.855
Thhalv10025867m.g Eutrema salsugineum Thhalv10025867m.g I 0.842