Pavir.Ga00401 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.Ga00401 T028497_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga00401.1.p BED ZF 49 95
Pavir.Ga00401.1.p BED ZF 148 194

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA014299 Oryza indica BGIOSGA014299 N 0.872
BGIOSGA028099 Oryza indica BGIOSGA028099 N 0.709
BRADI5G22670 Brachypodium distachyon BRADI5G22670 N 0.907
LPERR04G21800 Leersia perrieri LPERR04G21800 N 0.884
MLOC_21064 Hordeum vulgare MLOC_21064 N 0.884
OB04G33050 Oryza brachyantha OB04G33050 N 0.895
ONIVA08G04740 Oryza nivara ONIVA08G04740 N 0.709
OPUNC08G04700 Oryza punctata OPUNC08G04700 N 0.709
ORGLA04G0232300 Oryza glaberrima ORGLA04G0232300 N 0.872
ORUFI08G05400 Oryza rufipogon ORUFI08G05400 N 0.709
OS04G0628400 Oryza sativa OS04G0628400 N 0.872
OS08G0180500 Oryza sativa OS08G0180500 N 0.709
Pavir.Gb00429 Panicum virgatum Pavir.Gb00429 N 0.988
Sb06g029390 Sorghum bicolor Sb06g029390 N 0.907
Sb07g005045 Sorghum bicolor Sb07g005045 N 0.721
Si009364m.g Setaria italica Si009364m.g N 1.000
Si013272m.g Setaria italica Si013272m.g N 0.709
Traes_2AL_33E725A3F Triticum aestivum Traes_2AL_33E725A3F N 0.884
Traes_2BL_F5E17E76E Triticum aestivum Traes_2BL_F5E17E76E N 0.874
TRIUR3_02642 Triticum urartu TRIUR3_02642 N 0.884