BGIOSGA022375 (Oryza indica)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 BGIOSGA022375 T030934_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.886 0.520
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.886 0.520
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.886 0.520
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.879 0.980
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.866 0.540
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.866 0.540
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.866 0.540
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.866 0.540
UNE10
M01705_2.00 		Arabidopsis thaliana
HCACGTGM
KCACGTGD		 PBM
Weirauch et al.(2014)
pTH8112 		0.864 0.720
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.849 0.620
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.849 0.560
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.842 0.840
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.842 0.820
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.842 0.820
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.842 0.820
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.842 0.820
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.842 0.820
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA022375-PA bHLH 104 153

Links

Other bHLH family TFs
Other Oryza indica TFs

502 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_002_00170 Aquilegia coerulea Aquca_002_00170 I 0.000
Aquca_025_00333 Aquilegia coerulea Aquca_025_00333 I 0.000
GL1 Arabidopsis thaliana AT3G27920 I 0.000
WER Arabidopsis thaliana AT5G14750 D 0.000
MYB23 Arabidopsis thaliana AT5G40330 D 0.000
Bo2g012170 Brassica oleracea Bo2g012170 I 0.000
Bo7g090950 Brassica oleracea Bo7g090950 I 0.000
Bo9g165670 Brassica oleracea Bo9g165670 I 0.000
Bostr.0556s0467 Boechera stricta Bostr.0556s0467 I 0.000
Bostr.1460s0063 Boechera stricta Bostr.1460s0063 I 0.000
Bostr.2902s0211 Boechera stricta Bostr.2902s0211 I 0.000
Bostr.7200s0005 Boechera stricta Bostr.7200s0005 I 0.000
Bra008740 Brassica rapa Bra008740 I 0.000
Bra023486 Brassica rapa Bra023486 I 0.000
Bra025311 Brassica rapa Bra025311 I 0.000
Bra025589 Brassica rapa Bra025589 I 0.000
Bra039065 Brassica rapa Bra039065 I 0.000
Cagra.3160s0003 Capsella grandiflora Cagra.3160s0003 I 0.000
Cagra.3166s0078 Capsella grandiflora Cagra.3166s0078 I 0.000
Carubv10001990m.g Capsella rubella Carubv10001990m.g I 0.000
Carubv10005698m.g Capsella rubella Carubv10005698m.g I 0.000
Carubv10018791m.g Capsella rubella Carubv10018791m.g I 0.000
cassava26193.m1 Manihot esculenta cassava26193.m1 I 0.000
cassava27350.m1 Manihot esculenta cassava27350.m1 I 0.000
Ciclev10017556m.g Citrus clementina Ciclev10017556m.g I 0.000
Ciclev10032713m.g Citrus clementina Ciclev10032713m.g I 0.000
Eucgr.B00373 Eucalyptus grandis Eucgr.B00373 I 0.000
Eucgr.I01791 Eucalyptus grandis Eucgr.I01791 I 0.000
Eucgr.J02212 Eucalyptus grandis Eucgr.J02212 I 0.000
evm.TU.supercontig_124.57 Carica papaya evm.TU.supercontig_124.57 I 0.000
evm.TU.supercontig_46.32 Carica papaya evm.TU.supercontig_46.32 I 0.000
GL1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5000559 I 0.000
WER Arabidopsis lyrata fgenesh2_kg.6__1454__AT5G14750.1 I 0.000
gene31098-v1.0-hybrid Fragaria vesca gene31098-v1.0-hybrid I 0.000
Gorai.007G001800 Gossypium raimondii Gorai.007G001800 I 0.000
Gorai.012G061800 Gossypium raimondii Gorai.012G061800 I 0.000
LjT16O05.150.nd Lotus japonicus LjT16O05.150.nd I 0.000
MDP0000164048 Malus domestica MDP0000164048 I 0.000
MDP0000199965 Malus domestica MDP0000199965 I 0.000
MDP0000537324 Malus domestica MDP0000537324 I 0.000
MDP0000578193 Malus domestica MDP0000578193 I 0.000
MDP0000650225 Malus domestica MDP0000650225 I 0.000
mgf023205m Mimulus guttatus mgf023205m I 0.000
orange1.1g047269m.g Citrus sinensis orange1.1g047269m.g I 0.000
Pm006678 Prunus mume Pm006678 I 0.000
Pm024725 Prunus mume Pm024725 I 0.000
POPTR_0012s08190 Populus trichocarpa POPTR_0012s08190 I 0.000
POPTR_0015s08680 Populus trichocarpa POPTR_0015s08680 I 0.000
PRUPE_ppa010908mg Prunus persica PRUPE_ppa010908mg I 0.000
PRUPE_ppa014884mg Prunus persica PRUPE_ppa014884mg I 0.000
SapurV1A.1178s0050 Salix purpurea SapurV1A.1178s0050 I 0.000
SapurV1A.1404s0020 Salix purpurea SapurV1A.1404s0020 I 0.000
TCM_010360 Theobroma cacao TCM_010360 I 0.000
TCM_012057 Theobroma cacao TCM_012057 I 0.000
TCM_016886 Theobroma cacao TCM_016886 I 0.000
Thhalv10005428m.g Eutrema salsugineum Thhalv10005428m.g I 0.000
Thhalv10014715m.g Eutrema salsugineum Thhalv10014715m.g I 0.000
Thhalv10028340m.g Eutrema salsugineum Thhalv10028340m.g I 0.000
VIT_01s0127g00730 Vitis vinifera VIT_01s0127g00730 I 0.000
VIT_14s0066g01220 Vitis vinifera VIT_14s0066g01220 I 0.000
VIT_17s0000g08480 Vitis vinifera VIT_17s0000g08480 I 0.000