TFEC (Callithrix jacchus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSCJAG00000005199 T033317_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TFEC
M02778_2.00 		Homo sapiens
RNCACRTGAB
VTCAYGTGNY		 SELEX
Jolma et al.(2013)
TFEC_1 		0.914 1.000
TFEC
M04078_2.00 		Homo sapiens
NVCACGTGACN
NGTCACGTGBN		 SELEX
Yin et al.(2017)
TFEC_eDBD_HT-SELEX 		0.914 1.000
TFEC
M04079_2.00 		Homo sapiens
VNCATGTGAYN
NRTCACATGNB		 SELEX
Yin et al.(2017)
TFEC_eDBD_Methyl-HT-SELEX 		0.914 1.000
Tfec
M00755_2.00 		Mus musculus
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2013)
pTH2885 		0.914 0.981
Tfec
M01736_2.00 		Mus musculus
NCNCRTGVYN
NRBCAYGNGN		 PBM
Weirauch et al.(2014)
pTH5065 		0.914 0.981
Mitf
M01741_2.00 		Mus musculus
NCDCGTGAYN
NRTCACGHGN		 PBM
Weirauch et al.(2014)
pTH5465 		0.870 0.907
MITF
M08058_2.00 		Homo sapiens
NNNDRTCACGTGAYHNNN
NNNDRTCACGTGAYHNNN		 ChIP-seq
Mathelier et al.(2014)
MA0620.2 		0.870 0.907
MITF
M08740_2.00 		Homo sapiens
YCAYGTGACH
DGTCACRTGR		 Misc
Kulakovskiy et al.(2013)
MITF_HUMAN.H11MO.0.A 		0.870 0.907
Mitf
M08765_2.00 		Mus musculus
BCHYGTGACY
RGTCACRDGV		 Misc
Kulakovskiy et al.(2013)
MITF_MOUSE.H11MO.0.A 		0.870 0.907
Mitf
M09475_2.00 		Mus musculus
GTCACRWGVB
VBCWYGTGAC		 Misc
Heinz et al.(2010)
MastCells-MITF_GSE48085 		0.870 0.907
MITF
M09880_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MITF_Q4 		0.870 0.907
MITF
M09881_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MITF_Q6 		0.870 0.907
Tfe3
M01715_2.00 		Mus musculus
NCDCRTGAYN
NRTCAYGHGN		 PBM
Weirauch et al.(2014)
pTH5057 		0.870 0.889
Tfe3
M05833_2.00 		Mus musculus
CACGTGAY
RTCACGTG		 SMiLE-seq
Isakova et al.(2017)
TFE3 		0.870 0.889
Tfe3
M08743_2.00 		Mus musculus
TCACGTGACH
DGTCACGTGA		 Misc
Kulakovskiy et al.(2013)
TFE3_MOUSE.H11MO.0.A 		0.870 0.889
Tfe3
M09884_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TFEA_01 		0.870 0.889
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000009505 bHLH 139 192
ENSCJAP00000009516 bHLH 227 280
ENSCJAP00000045473 bHLH 110 163

Links

Other bHLH family TFs
Other Callithrix jacchus TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28345.m000111 Ricinus communis 28345.m000111 N
AMTR_s00009p00194700 Amborella trichopoda AMTR_s00009p00194700 N
AMTR_s00012p00258620 Amborella trichopoda AMTR_s00012p00258620 N
Aquca_003_00162 Aquilegia coerulea Aquca_003_00162 N
BGIOSGA025569 Oryza indica BGIOSGA025569 N
Bo7g065530 Brassica oleracea Bo7g065530 N
Bo9g059250 Brassica oleracea Bo9g059250 N
Bostr.3148s0115 Boechera stricta Bostr.3148s0115 N
Bra027500 Brassica rapa Bra027500 N
Bra033683 Brassica rapa Bra033683 N
BRADI1G52490 Brachypodium distachyon BRADI1G52490 I
Cagra.19122s0001 Capsella grandiflora Cagra.19122s0001 N
Carubv10028256m.g Capsella rubella Carubv10028256m.g N
cassava32634.m1 Manihot esculenta cassava32634.m1 N
cassava4410.m1 Manihot esculenta cassava4410.m1 N
chr1.CM0147.870.nc Lotus japonicus chr1.CM0147.870.nc I
Ciclev10022375m.g Citrus clementina Ciclev10022375m.g N
Cla006093 Citrullus lanatus Cla006093 N
Cla008348 Citrullus lanatus Cla008348 N
Cla008944 Citrullus lanatus Cla008944 I
Cla021877 Citrullus lanatus Cla021877 N
Cucsa.016990 Cucumis sativus Cucsa.016990 N
Cucsa.117650 Cucumis sativus Cucsa.117650 N
Cucsa.321760 Cucumis sativus Cucsa.321760 I
Eucgr.H00184 Eucalyptus grandis Eucgr.H00184 N
evm.TU.supercontig_44.98 Carica papaya evm.TU.supercontig_44.98 N
F775_00917 Aegilops tauschii F775_00917 I
gene30215-v1.0-hybrid Fragaria vesca gene30215-v1.0-hybrid N
GLYMA07G16290 Glycine max GLYMA07G16290 I
GLYMA10G32810 Glycine max GLYMA10G32810 N
GLYMA12G06340 Glycine max GLYMA12G06340 N
GLYMA20G34840 Glycine max GLYMA20G34840 N
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N
Gorai.011G172000 Gossypium raimondii Gorai.011G172000 N
GRMZM2G000126 Zea mays GRMZM2G000126 I
GRMZM2G344974 Zea mays GRMZM2G344974 I
GRMZM2G409452 Zea mays GRMZM2G409452 I
GRMZM2G443109 Zea mays GRMZM2G443109 I
GSMUA_Achr11G02150_001 Musa acuminata GSMUA_Achr11G02150_001 N
GSMUA_Achr8G14360_001 Musa acuminata GSMUA_Achr8G14360_001 N
LPERR07G09750 Leersia perrieri LPERR07G09750 N
Lus10021213.g Linum usitatissimum Lus10021213.g I
Lus10022204.g Linum usitatissimum Lus10022204.g I
Lus10022206.g Linum usitatissimum Lus10022206.g I
MDP0000143134 Malus domestica MDP0000143134 N
mgf024356m Mimulus guttatus mgf024356m I
MTR_1g070250 Medicago truncatula MTR_1g070250 N
MTR_1g075430 Medicago truncatula MTR_1g075430 N
MTR_4g064873 Medicago truncatula MTR_4g064873 N
MTR_7g063220 Medicago truncatula MTR_7g063220 I
OB02G44430 Oryza brachyantha OB02G44430 I
OB07G18110 Oryza brachyantha OB07G18110 N
OBART07G11660 Oryza barthii OBART07G11660 N
OGLUM07G11160 Oryza glumaepatula OGLUM07G11160 N
OLONG_012182 Oryza longistaminata OLONG_012182 N
ONIVA07G09630 Oryza nivara ONIVA07G09630 N
ONIVA07G09640 Oryza nivara ONIVA07G09640 N
OPUNC07G10480 Oryza punctata OPUNC07G10480 N
orange1.1g037433m.g Citrus sinensis orange1.1g037433m.g N
orange1.1g044013m.g Citrus sinensis orange1.1g044013m.g N
ORGLA07G0099100 Oryza glaberrima ORGLA07G0099100 N
ORUFI07G11810 Oryza rufipogon ORUFI07G11810 N
OS07G0417400 Oryza sativa OS07G0417400 N
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I
Pavir.Ba02387 Panicum virgatum Pavir.Ba02387 I
Pavir.Bb00955 Panicum virgatum Pavir.Bb00955 I
PDK_20s1360411g002 Phoenix dactylifera PDK_20s1360411g002 N
PK22236.1 Cannabis sativa PK22236.1 N
Pm002649 Prunus mume Pm002649 N
Pm009419 Prunus mume Pm009419 N
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I
PRUPE_ppa016491mg Prunus persica PRUPE_ppa016491mg N
PRUPE_ppa021945mg Prunus persica PRUPE_ppa021945mg N
PRUPE_ppb012667mg Prunus persica PRUPE_ppb012667mg N
SapurV1A.0007s0800 Salix purpurea SapurV1A.0007s0800 I
SapurV1A.0292s0190 Salix purpurea SapurV1A.0292s0190 I
Sb02g009930 Sorghum bicolor Sb02g009930 I
Sb04g037590 Sorghum bicolor Sb04g037590 I
scaffold_800693.1 Arabidopsis lyrata scaffold_800693.1 N
Si019563m.g Setaria italica Si019563m.g I
Si032478m.g Setaria italica Si032478m.g I
TCM_020819 Theobroma cacao TCM_020819 N
TCM_021876 Theobroma cacao TCM_021876 N
Traes_2AS_099955797 Triticum aestivum Traes_2AS_099955797 I
Traes_2BS_0544D9D4B Triticum aestivum Traes_2BS_0544D9D4B I
Traes_2DS_035AA95E3 Triticum aestivum Traes_2DS_035AA95E3 I
TRIUR3_25222 Triticum urartu TRIUR3_25222 I
VIT_06s0004g05260 Vitis vinifera VIT_06s0004g05260 N