TFEB (Cavia porcellus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSCPOG00000008027 T033415_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tfeb
M01728_2.00 		Mus musculus
CWCGTGAY
RTCACGWG		 PBM
Weirauch et al.(2014)
pTH5072 		0.914 1.000
TFEB
M02781_2.00 		Homo sapiens
RNCACGTGAY
RTCACGTGNY		 SELEX
Jolma et al.(2013)
TFEB_1 		0.914 1.000
TFEB
M02727_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Jolma et al.(2010)
TFEB_dimer 		0.914 1.000
TFEB
M04088_2.00 		Homo sapiens
YVCACGTGAYN
NRTCACGTGBR		 SELEX
Yin et al.(2017)
TFEB_eDBD_HT-SELEX 		0.914 1.000
TFEB
M08718_2.00 		Homo sapiens
CACGTGAYY
RRTCACGTG		 Misc
Kulakovskiy et al.(2013)
TFEB_HUMAN.H11MO.0.C 		0.914 1.000
Tfeb
M08753_2.00 		Mus musculus
CACGTGAYY
RRTCACGTG		 Misc
Kulakovskiy et al.(2013)
TFEB_MOUSE.H11MO.0.C 		0.914 1.000
TFEB
M04089_2.00 		Homo sapiens
VNCATGTGAYN
NRTCACATGNB		 SELEX
Yin et al.(2017)
TFEB_eDBD_Methyl-HT-SELEX 		0.914 1.000
Mitf
M01741_2.00 		Mus musculus
NCDCGTGAYN
NRTCACGHGN		 PBM
Weirauch et al.(2014)
pTH5465 		0.855 0.889
MITF
M08058_2.00 		Homo sapiens
NNNDRTCACGTGAYHNNN
NNNDRTCACGTGAYHNNN		 ChIP-seq
Mathelier et al.(2014)
MA0620.2 		0.855 0.889
MITF
M08740_2.00 		Homo sapiens
YCAYGTGACH
DGTCACRTGR		 Misc
Kulakovskiy et al.(2013)
MITF_HUMAN.H11MO.0.A 		0.855 0.889
Mitf
M08765_2.00 		Mus musculus
BCHYGTGACY
RGTCACRDGV		 Misc
Kulakovskiy et al.(2013)
MITF_MOUSE.H11MO.0.A 		0.855 0.889
Mitf
M09475_2.00 		Mus musculus
GTCACRWGVB
VBCWYGTGAC		 Misc
Heinz et al.(2010)
MastCells-MITF_GSE48085 		0.855 0.889
MITF
M09880_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MITF_Q4 		0.855 0.889
MITF
M09881_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MITF_Q6 		0.855 0.889
Tfe3
M01715_2.00 		Mus musculus
NCDCRTGAYN
NRTCAYGHGN		 PBM
Weirauch et al.(2014)
pTH5057 		0.855 0.870
Tfe3
M05833_2.00 		Mus musculus
CACGTGAY
RTCACGTG		 SMiLE-seq
Isakova et al.(2017)
TFE3 		0.855 0.870
Tfe3
M08743_2.00 		Mus musculus
TCACGTGACH
DGTCACGTGA		 Misc
Kulakovskiy et al.(2013)
TFE3_MOUSE.H11MO.0.A 		0.855 0.870
Tfe3
M09884_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TFEA_01 		0.855 0.870
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000007224 bHLH 235 288

Links

Other bHLH family TFs
Other Cavia porcellus TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30068.m002661 Ricinus communis 30068.m002661 I 0.000
AMTR_s00059p00094730 Amborella trichopoda AMTR_s00059p00094730 I 0.000
Aquca_002_01218 Aquilegia coerulea Aquca_002_01218 I 0.000
BZIP16 Arabidopsis thaliana AT2G35530 D 0.000
BGIOSGA036419 Oryza indica BGIOSGA036419 I 0.000
Bo4g038560 Brassica oleracea Bo4g038560 I 0.000
Bostr.23794s0549 Boechera stricta Bostr.23794s0549 I 0.000
Bra005335 Brassica rapa Bra005335 I 0.000
cassava11837.valid.m1 Manihot esculenta cassava11837.valid.m1 I 0.000
cassava37043.valid.m1 Manihot esculenta cassava37043.valid.m1 I 0.000
Ca_11455 Cicer arietinum Ca_11455 I 0.000
chr2.LjT41P23.50.nc Lotus japonicus chr2.LjT41P23.50.nc I 0.000
Ciclev10001333m.g Citrus clementina Ciclev10001333m.g I 0.000
Ciclev10025963m.g Citrus clementina Ciclev10025963m.g I 0.000
Cla014415 Citrullus lanatus Cla014415 I 0.000
Cla016502 Citrullus lanatus Cla016502 I 0.000
Cucsa.104970 Cucumis sativus Cucsa.104970 I 0.000
Cucsa.312800 Cucumis sativus Cucsa.312800 I 0.000
Eucgr.E00223 Eucalyptus grandis Eucgr.E00223 I 0.000
evm.TU.supercontig_158.7 Carica papaya evm.TU.supercontig_158.7 I 0.000
evm.TU.supercontig_2741.1 Carica papaya evm.TU.supercontig_2741.1 I 0.000
gene13716-v1.0-hybrid Fragaria vesca gene13716-v1.0-hybrid I 0.000
GLYMA01G01740 Glycine max GLYMA01G01740 I 0.000
GLYMA01G38381 Glycine max GLYMA01G38381 I 0.000
GLYMA02G06550 Glycine max GLYMA02G06550 I 0.000
GLYMA08G34280 Glycine max GLYMA08G34280 I 0.000
GLYMA09G34170 Glycine max GLYMA09G34170 I 0.000
GLYMA16G15810 Glycine max GLYMA16G15810 I 0.000
GLYMA16G25600 Glycine max GLYMA16G25600 I 0.000
Gorai.003G185700 Gossypium raimondii Gorai.003G185700 I 0.000
Gorai.008G068900 Gossypium raimondii Gorai.008G068900 I 0.000
GRMZM2G074373 Zea mays GRMZM2G074373 I 0.000
GSMUA_Achr4G04530_001 Musa acuminata GSMUA_Achr4G04530_001 I 0.000
GSMUA_Achr4G11610_001 Musa acuminata GSMUA_Achr4G11610_001 I 0.000
GSMUA_Achr4G18980_001 Musa acuminata GSMUA_Achr4G18980_001 I 0.000
GSMUA_Achr5G14150_001 Musa acuminata GSMUA_Achr5G14150_001 I 0.000
LjSGA_036158.1 Lotus japonicus LjSGA_036158.1 I 0.000
LPERR12G05920 Leersia perrieri LPERR12G05920 I 0.000
MDP0000185553 Malus domestica MDP0000185553 I 0.000
MDP0000231274 Malus domestica MDP0000231274 I 0.000
MDP0000286846 Malus domestica MDP0000286846 I 0.000
mgf000639m Mimulus guttatus mgf000639m I 0.000
mgf005151m Mimulus guttatus mgf005151m I 0.000
mgf008195m Mimulus guttatus mgf008195m I 0.000
mgf014804m Mimulus guttatus mgf014804m I 0.000
MTR_5g028850 Medicago truncatula MTR_5g028850 I 0.000
MTR_8g077950 Medicago truncatula MTR_8g077950 I 0.000
OB12G16310 Oryza brachyantha OB12G16310 I 0.000
OBART12G06770 Oryza barthii OBART12G06770 I 0.000
OGLUM12G08090 Oryza glumaepatula OGLUM12G08090 I 0.000
OLONG_021967 Oryza longistaminata OLONG_021967 I 0.000
OMERI12G04560 Oryza meridionalis OMERI12G04560 I 0.000
ONIVA12G06500 Oryza nivara ONIVA12G06500 I 0.000
OPUNC12G06450 Oryza punctata OPUNC12G06450 I 0.000
orange1.1g018605m.g Citrus sinensis orange1.1g018605m.g I 0.000
orange1.1g036551m.g Citrus sinensis orange1.1g036551m.g I 0.000
ORGLA12G0063500 Oryza glaberrima ORGLA12G0063500 I 0.000
ORUFI12G07600 Oryza rufipogon ORUFI12G07600 I 0.000
Pavir.Ca00403 Panicum virgatum Pavir.Ca00403 I 0.000
Pavir.Cb01814 Panicum virgatum Pavir.Cb01814 I 0.000
PDK_20s1368181g001 Phoenix dactylifera PDK_20s1368181g001 I 0.000
PDK_20s1372692g002 Phoenix dactylifera PDK_20s1372692g002 I 0.000
PDK_20s1708971g001 Phoenix dactylifera PDK_20s1708971g001 I 0.000
PGSC0003DMG400012660 Solanum tuberosum PGSC0003DMG400012660 I 0.000
PGSC0003DMG400018469 Solanum tuberosum PGSC0003DMG400018469 I 0.000
PK23964.1 Cannabis sativa PK23964.1 D 0.000
Pm023132 Prunus mume Pm023132 I 0.000
Pm026586 Prunus mume Pm026586 I 0.000
POPTR_0001s01840 Populus trichocarpa POPTR_0001s01840 I 0.000
POPTR_0003s09630 Populus trichocarpa POPTR_0003s09630 I 0.000
PRUPE_ppa006484mg Prunus persica PRUPE_ppa006484mg I 0.000
PRUPE_ppa008024mg Prunus persica PRUPE_ppa008024mg I 0.000
SapurV1A.0051s0250 Salix purpurea SapurV1A.0051s0250 I 0.000
SapurV1A.0063s0130 Salix purpurea SapurV1A.0063s0130 I 0.000
Sb08g008300 Sorghum bicolor Sb08g008300 I 0.000
SELMODRAFT_135978 Selaginella moellendorffii SELMODRAFT_135978 I 0.000
Si022325m.g Setaria italica Si022325m.g I 0.000
Solyc02g062950.2 Solanum lycopersicum Solyc02g062950.2 I 0.000
Solyc02g085610.2 Solanum lycopersicum Solyc02g085610.2 I 0.000
Solyc08g005290.2 Solanum lycopersicum Solyc08g005290.2 I 0.000
Solyc08g076100.2 Solanum lycopersicum Solyc08g076100.2 I 0.000
TCM_000436 Theobroma cacao TCM_000436 I 0.000
Thhalv10016740m.g Eutrema salsugineum Thhalv10016740m.g I 0.000
VIT_02s0012g02250 Vitis vinifera VIT_02s0012g02250 I 0.000
GBF1 Vitis vinifera VIT_04s0023g01360 I 0.000
VIT_18s0001g12120 Vitis vinifera VIT_18s0001g12120 I 0.000