usf1 (Gasterosteus aculeatus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSGACG00000005115 T034385_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
USF2
M04076_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF2_eDBD_HT-SELEX 		0.876 0.870
USF2
M08050_2.00 		Homo sapiens
NNVYCACGTGACHNNN
NNNDGTCACGTGRBNN		 ChIP-seq
Mathelier et al.(2014)
MA0526.2 		0.876 0.870
USF2
M07785_2.00 		Homo sapiens
NGTCACGTGRBSVVV
BBBSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF2_Stanford 		0.876 0.870
USF2
M07786_2.00 		Homo sapiens
NVGTCACGTGRBSVVV
BBBSVYCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF2_Stanford 		0.876 0.870
USF2
M07787_2.00 		Homo sapiens
RGTCACGTGVB
VBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_USF2_Stanford 		0.876 0.870
USF2
M07788_2.00 		Homo sapiens
NGTCACGTGRBSV
BSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF2_Stanford 		0.876 0.870
USF2
M07789_2.00 		Homo sapiens
RGTCACGTGRBSV
BSVYCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
K562_USF2_Stanford 		0.876 0.870
USF2
M08715_2.00 		Homo sapiens
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN		 Misc
Kulakovskiy et al.(2013)
USF2_HUMAN.H11MO.0.A 		0.876 0.870
USF2
M09812_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_01 		0.876 0.870
USF2
M09813_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_02 		0.876 0.870
USF2
M09814_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6_01 		0.876 0.870
USF2
M09815_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6 		0.876 0.870
USF2
M04077_2.00 		Homo sapiens
VNCAYGTGACN
NGTCACRTGNB		 SELEX
Yin et al.(2017)
USF2_eDBD_Methyl-HT-SELEX 		0.876 0.870
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000006774 bHLH 194 249
ENSGACP00000006787 bHLH 194 249

Links

Other bHLH family TFs
Other Gasterosteus aculeatus TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG004656.1 Alligator sinensis Alligator_sinensis_CCG004656.1 I 0.876
Cmyd_10000422 Chelonia mydas Cmyd_10000422 I 0.876
USF2 Anolis carolinensis ENSACAG00000010293 I 0.876
ENSAMEG00000000235 Ailuropoda melanoleuca ENSAMEG00000000235 I 0.876
ENSAMXG00000009564 Astyanax mexicanus ENSAMXG00000009564 I 0.876
ENSAMXG00000010483 Astyanax mexicanus ENSAMXG00000010483 N 0.846
ENSAMXG00000012300 Astyanax mexicanus ENSAMXG00000012300 N 0.846
USF2 Bos taurus ENSBTAG00000017035 I 0.876
USF2 Canis familiaris ENSCAFG00000007054 I 0.876
USF2 Callithrix jacchus ENSCJAG00000010451 I 0.864
USF2 Cavia porcellus ENSCPOG00000012147 I 0.876
ENSCSAG00000004521 Chlorocebus sabaeus ENSCSAG00000004521 I 0.876
usf2 Danio rerio ENSDARG00000020228 I 0.876
usf1 Danio rerio ENSDARG00000041689 N 0.871
USF2 Dasypus novemcinctus ENSDNOG00000003072 I 0.876
USF2 Equus caballus ENSECAG00000008583 I 0.876
USF2 Felis catus ENSFCAG00000008894 I 0.876
USF2 Homo sapiens ENSG00000105698 D 0.876
usf2 Gasterosteus aculeatus ENSGACG00000002481 N 0.846
USF2 Gasterosteus aculeatus ENSGACG00000012475 I 0.901
ENSGMOG00000013274 Gadus morhua ENSGMOG00000013274 I 0.901
ENSLACG00000001157 Latimeria chalumnae ENSLACG00000001157 I 0.846
ENSLACG00000003269 Latimeria chalumnae ENSLACG00000003269 I 0.876
USF2 Loxodonta africana ENSLAFG00000029360 I 0.876
ENSLOCG00000000641 Lepisosteus oculatus ENSLOCG00000000641 I 0.846
ENSLOCG00000005321 Lepisosteus oculatus ENSLOCG00000005321 I 0.876
USF2 Microcebus murinus ENSMICG00000001519 I 0.876
ENSMLUG00000028063 Myotis lucifugus ENSMLUG00000028063 I 0.876
USF2 Macaca mulatta ENSMMUG00000011291 I 0.876
USF2 Monodelphis domestica ENSMODG00000013843 I 0.876
ENSMPUG00000007099 Mustela putorius furo ENSMPUG00000007099 I 0.876
ENSNLEG00000011114 Nomascus leucogenys ENSNLEG00000011114 I 0.876
ENSOARG00000004745 Ovis aries ENSOARG00000004745 I 0.876
USF2 Oryctolagus cuniculus ENSOCUG00000026259 I 0.876
USF2 Otolemur garnettii ENSOGAG00000001476 I 0.876
ENSONIG00000013775 Oreochromis niloticus ENSONIG00000013775 N 0.846
USF2 Oryzias latipes ENSORLG00000015114 I 0.876
usf1 Oryzias latipes ENSORLG00000015402 I 0.914
ENSP00000222305-D1 Bos grunniens ENSP00000222305-D1 I 0.876
ENSPANG00000011040 Papio anubis ENSPANG00000011040 I 0.876
USF2 Procavia capensis ENSPCAG00000013941 I 0.876
ENSPFOG00000017027 Poecilia formosa ENSPFOG00000017027 I 0.884
ENSPMAG00000009581 Petromyzon marinus ENSPMAG00000009581 N 0.846
ENSPPYG00000009855 Pongo abelii ENSPPYG00000009855 I 0.876
ENSPSIG00000008600 Pelodiscus sinensis ENSPSIG00000008600 I 0.876
USF2 Pan troglodytes ENSPTRG00000010836 I 0.876
USF2 Pteropus vampyrus ENSPVAG00000004161 I 0.876
USF2 Sus scrofa ENSSSCG00000002885 I 0.876
ENSSTOG00000022219 Ictidomys tridecemlineatus ENSSTOG00000022219 I 0.876
usf1 Tetraodon nigroviridis ENSTNIG00000014361 I 0.914
USF2 Takifugu rubripes ENSTRUG00000005182 I 0.876
usf1 Takifugu rubripes ENSTRUG00000005343 I 0.914
ENSXMAG00000005137 Xiphophorus maculatus ENSXMAG00000005137 I 0.884
Myotis_brandtii_Usf2_10035177 Myotis brandtii Myotis_brandtii_Usf2_10035177 I 0.876
Ogr06118 Ophisaurus gracilis Ogr06118 I 0.876
Pvit_11612 Pogona vitticeps Pvit_11612 I 0.876
usf2.S Xenopus laevis XB-GENE-6253011 I 0.848
usf2.L Xenopus laevis XB-GENE-991248 I 0.848