CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Mitf
(
Rattus norvegicus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSRNOG00000008658
T037188_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Mitf
M01741_2.00
Mus musculus
NCDCGTGAYN
NRTCACGHGN
PBM
Weirauch et al.(2014)
pTH5465
0.914
1.000
MITF
M08058_2.00
Homo sapiens
NNNDRTCACGTGAYHNNN
NNNDRTCACGTGAYHNNN
ChIP-seq
Mathelier et al.(2014)
MA0620.2
0.914
1.000
MITF
M08740_2.00
Homo sapiens
YCAYGTGACH
DGTCACRTGR
Misc
Kulakovskiy et al.(2013)
MITF_HUMAN.H11MO.0.A
0.914
1.000
Mitf
M08765_2.00
Mus musculus
BCHYGTGACY
RGTCACRDGV
Misc
Kulakovskiy et al.(2013)
MITF_MOUSE.H11MO.0.A
0.914
1.000
Mitf
M09475_2.00
Mus musculus
GTCACRWGVB
VBCWYGTGAC
Misc
Heinz et al.(2010)
MastCells-MITF_GSE48085
0.914
1.000
MITF
M09880_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MITF_Q4
0.914
1.000
MITF
M09881_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MITF_Q6
0.914
1.000
Tfe3
M01715_2.00
Mus musculus
NCDCRTGAYN
NRTCAYGHGN
PBM
Weirauch et al.(2014)
pTH5057
0.914
0.981
Tfe3
M05833_2.00
Mus musculus
CACGTGAY
RTCACGTG
SMiLE-seq
Isakova et al.(2017)
TFE3
0.914
0.981
Tfe3
M08743_2.00
Mus musculus
TCACGTGACH
DGTCACGTGA
Misc
Kulakovskiy et al.(2013)
TFE3_MOUSE.H11MO.0.A
0.914
0.981
Tfe3
M09884_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TFEA_01
0.914
0.981
TFE3
M02773_2.00
Homo sapiens
VNCACGTGMY
RKCACGTGNB
SELEX
Jolma et al.(2013)
TFE3_1
0.871
0.963
TFE3
M04058_2.00
Homo sapiens
YVCACGTGAYN
NRTCACGTGBR
SELEX
Yin et al.(2017)
TFE3_eDBD_HT-SELEX
0.871
0.963
TFE3
M08709_2.00
Homo sapiens
TCACGTGACH
DGTCACGTGA
Misc
Kulakovskiy et al.(2013)
TFE3_HUMAN.H11MO.0.B
0.871
0.963
TFE3
M09790_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TFEA_Q6
0.871
0.963
TFE3
M04059_2.00
Homo sapiens
NRTCACATGBB
VVCATGTGAYN
SELEX
Yin et al.(2017)
TFE3_eDBD_Methyl-HT-SELEX
0.871
0.963
Tfec
M00755_2.00
Mus musculus
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2013)
pTH2885
0.870
0.926
Tfec
M01736_2.00
Mus musculus
NCNCRTGVYN
NRBCAYGNGN
PBM
Weirauch et al.(2014)
pTH5065
0.870
0.926
TFEC
M02778_2.00
Homo sapiens
RNCACRTGAB
VTCAYGTGNY
SELEX
Jolma et al.(2013)
TFEC_1
0.870
0.907
TFEC
M04078_2.00
Homo sapiens
NVCACGTGACN
NGTCACGTGBN
SELEX
Yin et al.(2017)
TFEC_eDBD_HT-SELEX
0.870
0.907
TFEC
M04079_2.00
Homo sapiens
VNCATGTGAYN
NRTCACATGNB
SELEX
Yin et al.(2017)
TFEC_eDBD_Methyl-HT-SELEX
0.870
0.907
Tfeb
M01728_2.00
Mus musculus
CWCGTGAY
RTCACGWG
PBM
Weirauch et al.(2014)
pTH5072
0.855
0.889
TFEB
M02781_2.00
Homo sapiens
RNCACGTGAY
RTCACGTGNY
SELEX
Jolma et al.(2013)
TFEB_1
0.855
0.889
TFEB
M02727_2.00
Homo sapiens
RTCACGTGAY
RTCACGTGAY
SELEX
Jolma et al.(2010)
TFEB_dimer
0.855
0.889
TFEB
M04088_2.00
Homo sapiens
YVCACGTGAYN
NRTCACGTGBR
SELEX
Yin et al.(2017)
TFEB_eDBD_HT-SELEX
0.855
0.889
TFEB
M08718_2.00
Homo sapiens
CACGTGAYY
RRTCACGTG
Misc
Kulakovskiy et al.(2013)
TFEB_HUMAN.H11MO.0.C
0.855
0.889
Tfeb
M08753_2.00
Mus musculus
CACGTGAYY
RRTCACGTG
Misc
Kulakovskiy et al.(2013)
TFEB_MOUSE.H11MO.0.C
0.855
0.889
TFEB
M04089_2.00
Homo sapiens
VNCATGTGAYN
NRTCACATGNB
SELEX
Yin et al.(2017)
TFEB_eDBD_Methyl-HT-SELEX
0.855
0.889
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000044350
bHLH
312
365
KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ
ENSRNOP00000073565
bHLH
296
349
KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ
Links
Other
bHLH
family TFs
Other
Rattus norvegicus
TFs
243 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A1O1_02953
Capronia coronata
A1O1_02953
I
A1O3_05076
Capronia epimyces
A1O3_05076
I
A1O5_01401
Cladophialophora psammophila
A1O5_01401
I
A1O7_08648
Cladophialophora yegresii
A1O7_08648
I
AB00218.1
Alternaria brassicicola
AB00218.1
I
ACRE_007430
Acremonium chrysogenum
ACRE_007430
I
AOL_s00006g292
Arthrobotrys oligospora
AOL_s00006g292
I
AUEXF2481DRAFT_6770
Aureobasidium subglaciale
AUEXF2481DRAFT_6770
I
BAUCODRAFT_86213
Baudoinia compniacensis
BAUCODRAFT_86213
I
BBA_03811
Beauveria bassiana
BBA_03811
I
Bcin08g00680
Botrytis cinerea
Bcin08g00680
N
BDDG_03885
Blastomyces dermatitidis
BDDG_03885
I
BGHDH14_bgh00206
Blumeria graminis
BGHDH14_bgh00206
I
BN7_2345
Wickerhamomyces ciferrii
BN7_2345
N
BN7_6590
Wickerhamomyces ciferrii
BN7_6590
I
ACLA_076150
Aspergillus clavatus
CADACLAG00006696
I
CADAFLAG00010295
Aspergillus flavus
CADAFLAG00010295
I
AFUA_2G17220
Aspergillus fumigatus
CADAFUAG00004619
I
CADANGAG00004639
Aspergillus niger
CADANGAG00004639
I
ANIA_09492
Aspergillus nidulans
CADANIAG00000196
I
ATEG_10025
Aspergillus terreus
CADATEAG00003259
I
NFIA_092600
Neosartorya fischeri
CADNFIAG00008096
I
CANTEDRAFT_125270
Candida tenuis
CANTEDRAFT_125270
I
CANTEDRAFT_133402
Candida tenuis
CANTEDRAFT_133402
I
CaO19.10266
Candida albicans
CaO19.10266
I
CaO19.12493
Candida albicans
CaO19.12493
I
CaO19.2752
Candida albicans
CaO19.2752
I
CaO19.5026
Candida albicans
CaO19.5026
I
CCM_08024
Cordyceps militaris
CCM_08024
I
CD36_12870
Candida dubliniensis
CD36_12870
I
CD36_42380
Candida dubliniensis
CD36_42380
I
CFIO01_07840
Colletotrichum fioriniae
CFIO01_07840
I
CH063_04661
Colletotrichum higginsianum
CH063_04661
I
CHGG_05487
Chaetomium globosum
CHGG_05487
I
CIMG_09396
Coccidioides immitis
CIMG_09396
I
CLUG_01374
Candida lusitaniae
CLUG_01374
I
CLUG_01374
Clavispora lusitaniae
CLUG_01374
I
CLUG_04828
Candida lusitaniae
CLUG_04828
I
CLUG_04828
Clavispora lusitaniae
CLUG_04828
I
Cob_05419
Colletotrichum orbiculare
Cob_05419
I
COCC4DRAFT_56721
Bipolaris maydis
COCC4DRAFT_56721
I
COCCADRAFT_6504
Bipolaris zeicola
COCCADRAFT_6504
I
COCMIDRAFT_5202
Bipolaris oryzae
COCMIDRAFT_5202
I
COCSADRAFT_176125
Bipolaris sorokiniana
COCSADRAFT_176125
I
COCVIDRAFT_30818
Bipolaris victoriae
COCVIDRAFT_30818
I
CORT_0E01530
Candida orthopsilosis
CORT_0E01530
I
CPAG_03992
Candida parapsilosis
CPAG_03992
I
CPC735_017710
Coccidioides posadasii
CPC735_017710
I
CPUR_00983
Claviceps purpurea
CPUR_00983
I
CSUB01_11387
Colletotrichum sublineola
CSUB01_11387
I
CTHT_0071740
Chaetomium thermophilum
CTHT_0071740
I
CTRG_00141
Candida tropicalis
CTRG_00141
I
CTRG_03662
Candida tropicalis
CTRG_03662
I
DEHA2D06490g
Debaryomyces hansenii
DEHA2D06490g
I
DEHA2E15928g
Debaryomyces hansenii
DEHA2E15928g
I
DOTSEDRAFT_69682
Dothistroma septosporum
DOTSEDRAFT_69682
I
DRE_00729
Drechslerella stenobrocha
DRE_00729
I
EPUS_06075
Endocarpon pusillum
EPUS_06075
I
estExt_fgenesh1_pg.C_10443
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_10443
I
estExt_fgenesh1_pg.C_11081
Cryphonectria parasitica
estExt_fgenesh1_pg.C_11081
I
estExt_Genewise1.C_170195
Neurospora discreta
estExt_Genewise1.C_170195
I
estExt_Genewise1Plus.C_140693
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_140693
I
estExt_gwp_genewisePlus_worm.C_chr_1.20217
Pichia stipitis
estExt_gwp_genewisePlus_worm.C_chr_1.20217
I
EURHEDRAFT_453290
Aspergillus ruber
EURHEDRAFT_453290
I
EV44_g1622
Erysiphe necator
EV44_g1622
I
e_gw1.00609.29.1
Aspergillus carbonarius
e_gw1.00609.29.1
I
e_gw1.20.504.1
Nectria haematococca
e_gw1.20.504.1
I
e_gww1.1.1.1414.1
Pichia stipitis
e_gww1.1.1.1414.1
I
F503_02301
Ophiostoma piceae uamh
F503_02301
I
FFUJ_07657
Fusarium fujikuroi
FFUJ_07657
I
fgenesh1_pg.C_chr_2000670
Mycosphaerella graminicola
fgenesh1_pg.C_chr_2000670
I
FGRRES_02743
Fusarium graminearum
FGRRES_02743
I
FOXG_10299
Fusarium oxysporum
FOXG_10299
I
FPSE_11115
Fusarium pseudograminearum
FPSE_11115
I
FVEG_08948
Fusarium verticillioides
FVEG_08948
I
G210_1021
Candida maltosa
G210_1021
I
G210_5085
Candida maltosa
G210_5085
I
G647_07623
Cladophialophora carrionii
G647_07623
I
GGTG_08988
Gaeumannomyces graminis
GGTG_08988
I
GLRG_10519
Colletotrichum graminicola
GLRG_10519
I
GNLVRS01_PISO0A05500g
Millerozyma farinosa
GNLVRS01_PISO0A05500g
I
GNLVRS01_PISO0B05567g
Millerozyma farinosa
GNLVRS01_PISO0B05567g
I
GNLVRS01_PISO0M20318g
Millerozyma farinosa
GNLVRS01_PISO0M20318g
I
GNLVRS01_PISO0N20561g
Millerozyma farinosa
GNLVRS01_PISO0N20561g
I
GSTUM_00010178001
Tuber melanosporum
GSTUM_00010178001
I
H072_10443
Dactylellina haptotyla
H072_10443
I
H101_06499
Trichophyton interdigitale
H101_06499
I
H102_04056
Trichophyton rubrum
H102_04056
I
H105_04085
Trichophyton soudanense
H105_04085
I
HCBG_01536
Histoplasma capsulatum
HCBG_01536
I
HMPREF1120_00931
Exophiala dermatitidis
HMPREF1120_00931
I
HMPREF1541_09730
Cyphellophora europaea
HMPREF1541_09730
I
HMPREF1624_05376
Sporothrix schenckii
HMPREF1624_05376
I
HPODL_04926
Ogataea parapolymorpha
HPODL_04926
I
KUCA_T00004312001
Kuraishia capsulata
KUCA_T00004312001
I
LELG_03482
Lodderomyces elongisporus
LELG_03482
I
LELG_04370
Lodderomyces elongisporus
LELG_04370
I
LEMA_P078460.1
Leptosphaeria maculans
LEMA_P078460.1
I
M437DRAFT_44413
Aureobasidium melanogenum
M437DRAFT_44413
I
M438DRAFT_334709
Aureobasidium pullulans
M438DRAFT_334709
I
MAC_01626
Metarhizium acridum
MAC_01626
I
MAJ_02407
Metarhizium majus
MAJ_02407
I
MAM_00201
Metarhizium album
MAM_00201
I
MANI_015197
Metarhizium anisopliae
MANI_015197
I
MAPG_11476
Magnaporthe poae
MAPG_11476
I
MBM_01810
Marssonina brunnea
MBM_01810
I
MBR_02792
Metarhizium brunneum
MBR_02792
I
MCYG_03934
Microsporum canis
MCYG_03934
I
MCYG_03934
Arthroderma otae
MCYG_03934
I
MGG_08757
Magnaporthe oryzae
MGG_08757
I
MGU_00220
Metarhizium guizhouense
MGU_00220
I
MGYG_07717
Microsporum gypseum
MGYG_07717
I
MYCFIDRAFT_59416
Pseudocercospora fijiensis
MYCFIDRAFT_59416
I
Mycgr3G90980
Zymoseptoria tritici
Mycgr3G90980
I
MYCTH_2303382
Myceliophthora thermophila
MYCTH_2303382
I
NCU09496
Neurospora crassa
NCU09496
I
NechaG43113
Fusarium solani
NechaG43113
I
NEUTE1DRAFT_80722
Neurospora tetrasperma
NEUTE1DRAFT_80722
I
OIDMADRAFT_40290
Oidiodendron maius
OIDMADRAFT_40290
I
PAAG_05527
Paracoccidioides sp lutzii
PAAG_05527
I
PABG_05027
Paracoccidioides brasiliensis
PABG_05027
I
PAS_chr3_0554
Komagataella pastoris
PAS_chr3_0554
I
PAS_chr4_0487
Komagataella pastoris
PAS_chr4_0487
I
Pc21g19860
Penicillium chrysogenum
Pc21g19860
I
PCH_Pc21g19860
Penicillium rubens
PCH_Pc21g19860
I
PDE_07881
Penicillium oxalicum
PDE_07881
I
PDIP_38500
Penicillium digitatum
PDIP_38500
I
PEX1_028120
Penicillium expansum
PEX1_028120
I
PFICI_05781
Pestalotiopsis fici
PFICI_05781
I
PGUG_02473
Candida guilliermondii
PGUG_02473
I
PGUG_02473
Meyerozyma guilliermondii
PGUG_02473
I
PGUG_03195
Candida guilliermondii
PGUG_03195
I
PGUG_03195
Meyerozyma guilliermondii
PGUG_03195
I
PICST_51364
Scheffersomyces stipitis
PICST_51364
I
PICST_80960
Scheffersomyces stipitis
PICST_80960
I
PITC_000810
Penicillium italicum
PITC_000810
I
PMAA_034200
Talaromyces marneffei
PMAA_034200
I
PMAA_034200
Penicillium marneffei
PMAA_034200
I
PODANS_7_1460
Podospora anserina
PODANS_7_1460
I
PTRG_09820
Pyrenophora triticirepentis
PTRG_09820
I
PTT_12094
Pyrenophora teres
PTT_12094
I
PV04_09226
Capronia semiimmersa
PV04_09226
I
PV05_00394
Exophiala xenobiotica
PV05_00394
I
PV07_00527
Cladophialophora immunda
PV07_00527
I
PV08_09225
Exophiala spinifera
PV08_09225
I
PV09_08170
Verruconis gallopava
PV09_08170
I
PV10_05123
Exophiala mesophila
PV10_05123
I
PV11_02934
Exophiala sideris
PV11_02934
I
S40285_06430
Stachybotrys chlorohalonata
S40285_06430
I
S40288_04249
Stachybotrys chartarum
S40288_04249
I
SAPIO_CDS2067
Scedosporium apiospermum
SAPIO_CDS2067
I
SBOR_3025
Sclerotinia borealis
SBOR_3025
N
SEPMUDRAFT_147395
Sphaerulina musiva
SEPMUDRAFT_147395
I
SETTUDRAFT_37086
Setosphaeria turcica
SETTUDRAFT_37086
I
SMAC_07883
Sordaria macrospora
SMAC_07883
I
SNOG_10626
Stagonospora nodorum
SNOG_10626
I
SNOG_10626
Phaeosphaeria nodorum
SNOG_10626
I
SOCG_02266
Schizosaccharomyces octosporus
SOCG_02266
I
rst2
Schizosaccharomyces pombe
SPAC6F12.02
D
SPAPADRAFT_153689
Spathaspora passalidarum
SPAPADRAFT_153689
I
SPBR_04561
Sporothrix brasiliensis
SPBR_04561
I
SPOG_00558
Schizosaccharomyces cryophilus
SPOG_00558
I
SS1G_03567
Sclerotinia sclerotiorum
SS1G_03567
I
TEQG_03348
Trichophyton equinum
TEQG_03348
I
TESG_04883
Trichophyton tonsurans
TESG_04883
I
THITE_2120332
Thielavia terrestris
THITE_2120332
I
TRIATDRAFT_283087
Trichoderma atroviride
TRIATDRAFT_283087
I
TRIREDRAFT_58897
Trichoderma reesei
TRIREDRAFT_58897
I
TRIVIDRAFT_213523
Trichoderma virens
TRIVIDRAFT_213523
I
TRV_02713
Trichophyton verrucosum
TRV_02713
I
TSTA_063340
Talaromyces stipitatus
TSTA_063340
I
U727_00433330511
Penicillium solitum
U727_00433330511
I
UREG_04917
Uncinocarpus reesii
UREG_04917
I
UV8b_6591
Ustilaginoidea virens
UV8b_6591
I
VDAG_09618
Verticillium dahliae
VDAG_09618
I
VHEMI08775
Torrubiella hemipterigena
VHEMI08775
I
W97_08313
Coniosporium apollinis
W97_08313
I
X797_000845
Metarhizium robertsii
X797_000845
I
XP_002492783.1
Pichia pastoris
XP_002492783.1
I
XP_002493922.1
Pichia pastoris
XP_002493922.1
I
YALI0_D18678g
Yarrowia lipolytica
YALI0_D18678g
I
Z517_01468
Fonsecaea pedrosoi
Z517_01468
I
Z518_02984
Rhinocladiella mackenziei
Z518_02984
I
Z519_11866
Cladophialophora bantiana
Z519_11866
I