CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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twist1b
(
Tetraodon nigroviridis
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSTNIG00000018440
T037801_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TWIST1
M08052_2.00
Homo sapiens
NNNCCAGATGTNN
NNACATCTGGNNN
ChIP-seq
Mathelier et al.(2014)
MA1123.1
0.890
1.000
TWIST1
M08722_2.00
Homo sapiens
WAATBRRWWMCAGATGB
VCATCTGKWWYYVATTW
Misc
Kulakovskiy et al.(2013)
TWST1_HUMAN.H11MO.0.A
0.890
1.000
Twist1
M08766_2.00
Mus musculus
WAATNRRWWMCAKMTGB
VCAKMTGKWWYYNATTW
Misc
Kulakovskiy et al.(2013)
TWST1_MOUSE.H11MO.0.B
0.890
1.000
TWIST1
M09831_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TWIST_Q6_01
0.890
1.000
TWIST1
M09832_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TWIST_Q6
0.890
1.000
Twist2
M01718_2.00
Mus musculus
NACATATGKN
NMCATATGTN
PBM
Weirauch et al.(2014)
pTH5033
0.890
0.961
twi
M03605_2.00
Drosophila melanogaster
MACACRTGKB
VMCAYGTGTK
SELEX
Nitta et al.(2015)
twi_1
0.883
0.882
twi
M03606_2.00
Drosophila melanogaster
MNDCMYRHCGVD
HBCGDYRKGHNK
SELEX
Nitta et al.(2015)
twi_2
0.883
0.882
twi
M05955_2.00
Drosophila melanogaster
VCCAGATGTB
VACATCTGGB
B1H
Zhu et al.(2011)
twi_da_SANGER_5_FBgn0003900
0.883
0.882
twi
M05956_2.00
Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN
B1H
Zhu et al.(2011)
twi_FlyReg_FBgn0003900
0.883
0.882
twi
M07538_2.00
Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN
DNaseI footprinting
Mathelier et al.(2014)
MA0249.1
0.883
0.882
twi
M09657_2.00
Drosophila melanogaster
AACAKVTGBBVD
HBVVCABMTGTT
Misc
Kulakovskiy et al.(2009)
twi
0.883
0.882
twi
M09892_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TWI_Q6
0.883
0.882
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000021610
bHLH
75
125
QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL
Links
Other
bHLH
family TFs
Other
Tetraodon nigroviridis
TFs
237 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAEL002902
Aedes aegypti
AAEL002902
I
0.879
AALB010655
Anopheles albimanus
AALB010655
I
0.871
Aan_R001044
Calypte anna
Aan_R001044
I
0.890
Aan_R002857
Calypte anna
Aan_R002857
I
0.890
AARA000771
Anopheles arabiensis
AARA000771
I
0.871
AATE005140
Anopheles atroparvus
AATE005140
I
0.879
ACEP23430
Atta cephalotes
ACEP23430
I
0.914
ACHR006076
Anopheles christyi
ACHR006076
I
0.871
ACOM023427
Anopheles coluzzii
ACOM023427
I
0.879
ACUA022223
Anopheles culicifacies
ACUA022223
I
0.871
ACYPI001448
Acyrthosiphon pisum
ACYPI001448
I
0.879
ADIR004364
Anopheles dirus
ADIR004364
I
0.871
AEPI000695
Anopheles epiroticus
AEPI000695
I
0.871
AFAF020800
Anopheles farauti
AFAF020800
I
0.879
Afo_R010658
Aptenodytes forsteri
Afo_R010658
I
0.890
Afo_R013292
Aptenodytes forsteri
Afo_R013292
I
0.870
AFUN009694
Anopheles funestus
AFUN009694
I
0.871
AGAP011985
Anopheles gambiae
AGAP011985
I
0.879
Alligator_sinensis_CCG002585.1
Alligator sinensis
Alligator_sinensis_CCG002585.1
I
0.890
Alligator_sinensis_CCG005115.1
Alligator sinensis
Alligator_sinensis_CCG005115.1
I
0.870
Alligator_sinensis_CCG008488.1
Alligator sinensis
Alligator_sinensis_CCG008488.1
I
0.890
AMEC000330
Anopheles melas
AMEC000330
I
0.879
AMEM016167
Anopheles merus
AMEM016167
I
0.871
AMIN004405
Anopheles minimus
AMIN004405
I
0.871
AQUA008654
Anopheles quadriannulatus
AQUA008654
I
0.871
ASTEI05879
Anopheles stephensi
ASTEI05879
I
0.879
A_07561
Schistosoma haematobium
A_07561
I
0.859
BGIBMGA008990
Bombyx mori
BGIBMGA008990
I
0.849
BGLB003400
Biomphalaria glabrata
BGLB003400
I
0.879
BGLB010605
Biomphalaria glabrata
BGLB010605
I
0.879
Brh_R012765
Buceros rhinoceros
Brh_R012765
I
0.890
CapteG111042
Capitella teleta
CapteG111042
I
0.876
CapteG154829
Capitella teleta
CapteG154829
I
0.879
Cflo_04586--NP_001011637.1_APIME
Camponotus floridanus
Cflo_04586--NP_001011637.1_APIME
I
0.914
CGI_10006631
Crassostrea gigas
CGI_10006631
I
0.879
CGI_10013641
Crassostrea gigas
CGI_10013641
I
0.903
CLEC011700
Cimex lectularius
CLEC011700
I
0.890
Cmyd_10002489
Chelonia mydas
Cmyd_10002489
I
0.870
Cmyd_10006750
Chelonia mydas
Cmyd_10006750
I
0.890
CPIJ012827
Culex quinquefasciatus
CPIJ012827
I
0.871
CPIJ012828
Culex quinquefasciatus
CPIJ012828
I
0.871
CpipJ_CPIJ012827
Culex pipiens
CpipJ_CPIJ012827
I
0.871
CpipJ_CPIJ012828
Culex pipiens
CpipJ_CPIJ012828
I
0.871
csin110283
Clonorchis sinensis
csin110283
I
0.859
D915_00417
Fasciola hepatica
D915_00417
I
0.851
D917_00468
Trichinella nativa
D917_00468
I
0.914
D918_07072
Trichuris suis
D918_07072
I
0.914
DAPPUDRAFT_320202
Daphnia pulex
DAPPUDRAFT_320202
I
0.890
DILT_0001206901
Diphyllobothrium latum
DILT_0001206901
I
0.859
ECANG7_02703
Echinococcus canadensis
ECANG7_02703
I
0.883
ECPE_0000551801
Echinostoma caproni
ECPE_0000551801
I
0.859
EFV58362
Trichinella spiralis
EFV58362
I
0.914
EmuJ_000663800
Echinococcus multilocularis
EmuJ_000663800
I
0.859
ENSACAG00000009715
Anolis carolinensis
ENSACAG00000009715
I
0.879
twist1
Anolis carolinensis
ENSACAG00000011825
I
0.890
ENSACAG00000015086
Anolis carolinensis
ENSACAG00000015086
I
0.859
ENSAMEG00000008556
Ailuropoda melanoleuca
ENSAMEG00000008556
I
0.890
ENSAMEG00000020165
Ailuropoda melanoleuca
ENSAMEG00000020165
I
0.890
ENSAMXG00000024993
Astyanax mexicanus
ENSAMXG00000024993
I
0.903
ENSAMXG00000025039
Astyanax mexicanus
ENSAMXG00000025039
I
0.859
ENSAMXG00000025095
Astyanax mexicanus
ENSAMXG00000025095
I
0.879
ENSAMXG00000025610
Astyanax mexicanus
ENSAMXG00000025610
I
0.914
ENSAMXG00000025657
Astyanax mexicanus
ENSAMXG00000025657
I
0.879
ENSAPLG00000000878
Anas platyrhynchos
ENSAPLG00000000878
I
0.890
ENSAPLG00000007177
Anas platyrhynchos
ENSAPLG00000007177
I
0.890
TWIST2
Bos taurus
ENSBTAG00000021444
I
0.890
TWIST1
Bos taurus
ENSBTAG00000046922
I
0.890
TWIST2
Canis familiaris
ENSCAFG00000012469
I
0.890
TWIST2
Callithrix jacchus
ENSCJAG00000023006
I
0.890
TWIST2
Cavia porcellus
ENSCPOG00000025980
I
0.890
ENSCSAG00000018801
Chlorocebus sabaeus
ENSCSAG00000018801
I
0.890
ENSCSAG00000019610
Chlorocebus sabaeus
ENSCSAG00000019610
I
0.890
twist3
Danio rerio
ENSDARG00000019646
I
0.859
twist1a
Danio rerio
ENSDARG00000030402
I
0.914
twist1b
Danio rerio
ENSDARG00000076010
I
0.914
twist2
Danio rerio
ENSDARG00000078266
I
0.903
TWIST2
Dasypus novemcinctus
ENSDNOG00000002434
I
0.890
TWIST1
Dasypus novemcinctus
ENSDNOG00000037354
I
0.890
Twist2
Dipodomys ordii
ENSDORG00000005906
I
0.850
ENSDORG00000012866
Dipodomys ordii
ENSDORG00000012866
I
0.890
TWIST1
Erinaceus europaeus
ENSEEUG00000015333
I
0.890
TWIST2
Echinops telfairi
ENSETEG00000009809
I
0.890
ENSETEG00000013115
Echinops telfairi
ENSETEG00000013115
I
0.890
ENSFALG00000009781
Ficedula albicollis
ENSFALG00000009781
I
0.890
ENSFALG00000014990
Ficedula albicollis
ENSFALG00000014990
I
0.890
ENSFALG00000015081
Ficedula albicollis
ENSFALG00000015081
I
0.894
TWIST1
Homo sapiens
ENSG00000122691
D
0.890
TWIST2
Homo sapiens
ENSG00000233608
I
0.890
twist3b
Gasterosteus aculeatus
ENSGACG00000004773
I
0.859
TWIST1
Gasterosteus aculeatus
ENSGACG00000006420
I
0.914
twist3
Gasterosteus aculeatus
ENSGACG00000007963
I
0.859
twist1b
Gasterosteus aculeatus
ENSGACG00000008070
I
0.890
ENSGALG00000004274
Gallus gallus
ENSGALG00000004274
I
0.890
ENSGALG00000006321
Gallus gallus
ENSGALG00000006321
I
0.870
ENSGALG00000026059
Gallus gallus
ENSGALG00000026059
I
0.890
ENSGMOG00000002790
Gadus morhua
ENSGMOG00000002790
I
0.879
ENSGMOG00000003155
Gadus morhua
ENSGMOG00000003155
I
0.859
ENSLACG00000012096
Latimeria chalumnae
ENSLACG00000012096
I
0.890
ENSLACG00000013366
Latimeria chalumnae
ENSLACG00000013366
I
0.890
ENSLACG00000019113
Latimeria chalumnae
ENSLACG00000019113
I
0.870
TWIST2
Loxodonta africana
ENSLAFG00000032174
I
0.890
ENSLOCG00000017835
Lepisosteus oculatus
ENSLOCG00000017835
I
0.890
ENSLOCG00000018198
Lepisosteus oculatus
ENSLOCG00000018198
I
0.859
ENSLOCG00000018350
Lepisosteus oculatus
ENSLOCG00000018350
I
0.890
ENSMEUG00000013853
Macropus eugenii
ENSMEUG00000013853
I
0.890
ENSMGAG00000002218
Meleagris gallopavo
ENSMGAG00000002218
I
0.890
TWIST1
Meleagris gallopavo
ENSMGAG00000009311
I
0.870
TWIST1
Myotis lucifugus
ENSMLUG00000007047
I
0.890
TWIST2
Myotis lucifugus
ENSMLUG00000023316
I
0.890
TWIST1
Macaca mulatta
ENSMMUG00000011173
I
0.890
TWIST2
Macaca mulatta
ENSMMUG00000021909
I
0.890
ENSMODG00000001412
Monodelphis domestica
ENSMODG00000001412
I
0.890
TWIST1
Monodelphis domestica
ENSMODG00000023924
I
0.890
ENSMPUG00000019429
Mustela putorius furo
ENSMPUG00000019429
I
0.890
Twist2
Mus musculus
ENSMUSG00000007805
D
0.890
Twist1
Mus musculus
ENSMUSG00000035799
D
0.890
ENSNLEG00000011342
Nomascus leucogenys
ENSNLEG00000011342
I
0.890
ENSNLEG00000019264
Nomascus leucogenys
ENSNLEG00000019264
I
0.890
TWIST1
Ornithorhynchus anatinus
ENSOANG00000009614
I
0.890
ENSOANG00000012950
Ornithorhynchus anatinus
ENSOANG00000012950
I
0.890
ENSOARG00000000265
Ovis aries
ENSOARG00000000265
I
0.890
ENSOARG00000009754
Ovis aries
ENSOARG00000009754
I
0.890
TWIST2
Oryctolagus cuniculus
ENSOCUG00000004073
I
0.890
TWIST2
Otolemur garnettii
ENSOGAG00000029007
I
0.890
ENSONIG00000020502
Oreochromis niloticus
ENSONIG00000020502
I
0.914
ENSONIG00000020610
Oreochromis niloticus
ENSONIG00000020610
I
0.914
ENSONIG00000021177
Oreochromis niloticus
ENSONIG00000021177
I
0.859
ENSONIG00000021342
Oreochromis niloticus
ENSONIG00000021342
I
0.903
ENSONIG00000021420
Oreochromis niloticus
ENSONIG00000021420
I
0.855
TWIST2
Ochotona princeps
ENSOPRG00000017069
I
0.890
TWIST1
Oryzias latipes
ENSORLG00000004012
I
0.890
twist1
Oryzias latipes
ENSORLG00000007251
I
0.914
twist3
Oryzias latipes
ENSORLG00000016373
I
0.859
twist2
Oryzias latipes
ENSORLG00000018096
I
0.903
ENSP00000405176-D1
Bos grunniens
ENSP00000405176-D1
I
0.890
ENSPANG00000001578
Papio anubis
ENSPANG00000001578
I
0.890
ENSPFOG00000019887
Poecilia formosa
ENSPFOG00000019887
I
0.914
ENSPFOG00000020053
Poecilia formosa
ENSPFOG00000020053
I
0.914
ENSPFOG00000020314
Poecilia formosa
ENSPFOG00000020314
I
0.903
ENSPFOG00000020501
Poecilia formosa
ENSPFOG00000020501
I
0.859
ENSPMAG00000003993
Petromyzon marinus
ENSPMAG00000003993
I
0.879
ENSPMAG00000010126
Petromyzon marinus
ENSPMAG00000010126
I
0.879
ENSPPYG00000017754
Pongo abelii
ENSPPYG00000017754
I
0.890
ENSPSIG00000001961
Pelodiscus sinensis
ENSPSIG00000001961
I
0.870
ENSPSIG00000012843
Pelodiscus sinensis
ENSPSIG00000012843
I
0.890
ENSPTRG00000018960
Pan troglodytes
ENSPTRG00000018960
I
0.890
TWIST2
Pan troglodytes
ENSPTRG00000033910
I
0.890
TWIST1
Pteropus vampyrus
ENSPVAG00000001710
I
0.890
Twist1
Rattus norvegicus
ENSRNOG00000011101
I
0.890
Twist2
Rattus norvegicus
ENSRNOG00000020355
I
0.890
ENSSHAG00000003328
Sarcophilus harrisii
ENSSHAG00000003328
I
0.890
TWIST1
Sus scrofa
ENSSSCG00000015370
I
0.890
TWIST2
Sus scrofa
ENSSSCG00000016343
I
0.890
ENSSTOG00000004633
Ictidomys tridecemlineatus
ENSSTOG00000004633
I
0.890
TWIST1
Taeniopygia guttata
ENSTGUG00000002643
I
0.890
ENSTGUG00000003194
Taeniopygia guttata
ENSTGUG00000003194
I
0.890
ENSTGUG00000003756
Taeniopygia guttata
ENSTGUG00000003756
I
0.894
twist3
Tetraodon nigroviridis
ENSTNIG00000000441
I
0.879
twist2
Tetraodon nigroviridis
ENSTNIG00000001562
I
0.903
TWIST1
Tetraodon nigroviridis
ENSTNIG00000001678
I
0.914
twist2
Takifugu rubripes
ENSTRUG00000006090
I
0.903
twist3
Takifugu rubripes
ENSTRUG00000011374
I
0.859
twist3
Takifugu rubripes
ENSTRUG00000012607
I
0.879
twist1
Takifugu rubripes
ENSTRUG00000015797
I
0.914
ENSXMAG00000019787
Xiphophorus maculatus
ENSXMAG00000019787
I
0.914
ENSXMAG00000019956
Xiphophorus maculatus
ENSXMAG00000019956
I
0.859
ENSXMAG00000019999
Xiphophorus maculatus
ENSXMAG00000019999
I
0.879
ENSXMAG00000020062
Xiphophorus maculatus
ENSXMAG00000020062
I
0.903
ENSXMAG00000020142
Xiphophorus maculatus
ENSXMAG00000020142
I
0.914
estExt_gwp.C_4170045
Branchiostoma floridae
estExt_gwp.C_4170045
I
0.890
twi
Drosophila melanogaster
FBgn0003900
D
0.883
twi
Drosophila simulans
FBgn0016355
I
0.883
twi
Drosophila virilis
FBgn0020065
I
0.883
twi
Drosophila erecta
FBgn0064598
I
0.883
twi
Drosophila yakuba
FBgn0084444
I
0.883
GF13559
Drosophila ananassae
FBgn0090588
I
0.883
GH20971
Drosophila grimshawi
FBgn0128433
I
0.883
GI21307
Drosophila mojavensis
FBgn0144037
I
0.883
GL11229
Drosophila persimilis
FBgn0148838
I
0.883
GM15978
Drosophila sechellia
FBgn0170894
I
0.883
GK19547
Drosophila willistoni
FBgn0221545
I
0.883
twi
Drosophila pseudoobscura
FBgn0243556
I
0.883
fgenesh2_pm.scaffold_217000008
Branchiostoma floridae
fgenesh2_pm.scaffold_217000008
I
0.890
GB40416
Apis mellifera
GB40416
I
0.903
Gfo_R012065
Geospiza fortis
Gfo_R012065
I
0.890
Gfo_R014393
Geospiza fortis
Gfo_R014393
I
0.894
HDID_0001003601
Hymenolepis diminuta
HDID_0001003601
I
0.859
HelroG155122
Helobdella robusta
HelroG155122
I
0.856
HMEL011603
Heliconius melpomene
HMEL011603
I
0.849
HmN_000912800
Hymenolepis microstoma
HmN_000912800
I
0.859
HNAJ_0000179601
Hymenolepis nana
HNAJ_0000179601
I
0.859
Hsal_01530--NP_001011637.1_APIME
Harpegnathos saltator
Hsal_01530--NP_001011637.1_APIME
I
0.879
ISCW009433
Ixodes scapularis
ISCW009433
I
0.903
KGM_08280
Danaus plexippus
KGM_08280
I
0.849
L798_05856
Zootermopsis nevadensis
L798_05856
I
0.890
LCUP006189
Lucilia cuprina
LCUP006189
I
0.883
LDEC006528
Leptinotarsa decemlineata
LDEC006528
I
0.890
LLOJ002131
Lutzomyia longipalpis
LLOJ002131
I
0.879
LotgiG179182
Lottia gigantea
LotgiG179182
I
MCOS_0000111401
Mesocestoides corti
MCOS_0000111401
I
0.859
MDOA005417
Musca domestica
MDOA005417
I
0.883
Myotis_brandtii_Twist1_10031742
Myotis brandtii
Myotis_brandtii_Twist1_10031742
I
0.890
NEMVEDRAFT_v1g234699
Nematostella vectensis
NEMVEDRAFT_v1g234699
I
0.868
nRc.2.0.1.g46228
Romanomermis culicivorax
nRc.2.0.1.g46228
I
0.846
NV10141
Nasonia vitripennis
NV10141
I
0.879
Ocbimv22015922m.g
Octopus bimaculoides
Ocbimv22015922m.g
I
0.890
Ogr01719
Ophisaurus gracilis
Ogr01719
I
0.870
Ogr06591
Ophisaurus gracilis
Ogr06591
I
0.890
Ogr11552
Ophisaurus gracilis
Ogr11552
I
0.890
Ogr11553
Ophisaurus gracilis
Ogr11553
I
0.890
PHUM396880
Pediculus humanus
PHUM396880
I
0.879
PPAI002101
Phlebotomus papatasi
PPAI002101
I
0.868
Pvit_02271
Pogona vitticeps
Pvit_02271
I
0.890
Pvit_05844
Pogona vitticeps
Pvit_05844
I
0.870
PXEA_0000232401
Protopolystoma xenopodis
PXEA_0000232401
I
0.851
RPRC000323
Rhodnius prolixus
RPRC000323
I
0.877
Sakowv30001350m.g
Saccoglossus kowalevskii
Sakowv30001350m.g
I
0.879
SCUD_0002255501
Schistosoma curassoni
SCUD_0002255501
I
0.851
SINV20920
Solenopsis invicta
SINV20920
I
0.890
Sjc_0042560
Schistosoma japonicum
Sjc_0042560
I
0.859
Smp_203270
Schistosoma mansoni
Smp_203270
I
0.859
SMU15037660
Schmidtea mediterranea
SMU15037660
I
0.870
SPU_030059
Strongylocentrotus purpuratus
SPU_030059
I
0.883
SSLN_0000059301
Schistocephalus solidus
SSLN_0000059301
I
0.859
TASK_0000180901
Taenia asiatica
TASK_0000180901
I
0.859
TC014598
Tribolium castaneum
TC014598
I
0.890
tetur03g03150
Tetranychus urticae
tetur03g03150
I
0.849
TMUE_s0004013100
Trichuris muris
TMUE_s0004013100
I
0.914
TRE_0001282801
Trichobilharzia regenti
TRE_0001282801
I
0.851
TsM_000716700
Taenia solium
TsM_000716700
I
0.859
TTAC_0000855201
Hydatigera taeniaeformis
TTAC_0000855201
I
0.851
TTRE_0000397101
Trichuris trichiura
TTRE_0000397101
I
0.914
twist1
Xenopus tropicalis
XB-GENE-479802
I
0.903
twist2
Xenopus tropicalis
XB-GENE-5878700
I
0.859
twist1.L
Xenopus laevis
XB-GENE-6255840
I
0.903
twist1.S
Xenopus laevis
XB-GENE-865309
I
0.903
YQE_04855
Dendroctonus ponderosae
YQE_04855
I
0.890