fgenesh2_kg.3__3440__AT2G18300.2 (Arabidopsis lyrata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 fgenesh2_kg.3__3440__AT2G18300.2 T039127_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.914 1.000
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.914 1.000
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.914 0.960
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.864 0.840
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.864 0.820
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.864 0.820
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.852 0.800
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.852 0.800
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.852 0.760
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.852 0.760
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.851 0.800
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.851 0.800
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.839 0.700
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__3440__AT2G18300.2 bHLH 193 242

Links

Other bHLH family TFs
Other Arabidopsis lyrata TFs

729 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30006.m000282 Ricinus communis 30006.m000282 N
30170.m013669 Ricinus communis 30170.m013669 N
AMTR_s00159p00062070 Amborella trichopoda AMTR_s00159p00062070 N
Aquca_009_00241 Aquilegia coerulea Aquca_009_00241 N
AT2G41710 Arabidopsis thaliana AT2G41710 N
BGIOSGA019793 Oryza indica BGIOSGA019793 N
Bo3g035770 Brassica oleracea Bo3g035770 N
Bo4g013420 Brassica oleracea Bo4g013420 N
Bostr.11568s0008 Boechera stricta Bostr.11568s0008 N
Bra004641 Brassica rapa Bra004641 N
BRADI2G26987 Brachypodium distachyon BRADI2G26987 N
Cagra.0914s0005 Capsella grandiflora Cagra.0914s0005 N
Carubv10023272m.g Capsella rubella Carubv10023272m.g N
cassava19560.m1 Manihot esculenta cassava19560.m1 N
cassava421.valid.m1 Manihot esculenta cassava421.valid.m1 N
Ca_07237 Cicer arietinum Ca_07237 N
Ciclev10005012m.g Citrus clementina Ciclev10005012m.g N
Cla022214 Citrullus lanatus Cla022214 N
Cucsa.338170 Cucumis sativus Cucsa.338170 N
Cucsa.353040 Cucumis sativus Cucsa.353040 I
Eucgr.A02341 Eucalyptus grandis Eucgr.A02341 N
evm.TU.supercontig_224.4 Carica papaya evm.TU.supercontig_224.4 N
F775_10869 Aegilops tauschii F775_10869 N
fgenesh2_kg.4__2311__AT2G41710.2 Arabidopsis lyrata fgenesh2_kg.4__2311__AT2G41710.2 N
gene02470-v1.0-hybrid Fragaria vesca gene02470-v1.0-hybrid N
GLYMA02G33090 Glycine max GLYMA02G33090 N
GLYMA03G29240 Glycine max GLYMA03G29240 N
GLYMA19G31960 Glycine max GLYMA19G31960 N
Gorai.003G091500 Gossypium raimondii Gorai.003G091500 N
GRMZM2G013657 Zea mays GRMZM2G013657 N
GRMZM2G146688 Zea mays GRMZM2G146688 N
LjSGA_012098.1 Lotus japonicus LjSGA_012098.1 N
LPERR05G11930 Leersia perrieri LPERR05G11930 N
Lus10000965.g Linum usitatissimum Lus10000965.g N
Lus10040140.g Linum usitatissimum Lus10040140.g N
MDP0000314518 Malus domestica MDP0000314518 N
mgf017600m Mimulus guttatus mgf017600m N
mgf019897m Mimulus guttatus mgf019897m N
MLOC_7325 Hordeum vulgare MLOC_7325 N
MTR_7g091390 Medicago truncatula MTR_7g091390 N
OB05G22940 Oryza brachyantha OB05G22940 N
OBART05G15060 Oryza barthii OBART05G15060 N
OGLUM05G15890 Oryza glumaepatula OGLUM05G15890 N
OLONG_020459 Oryza longistaminata OLONG_020459 N
OMERI05G13370 Oryza meridionalis OMERI05G13370 N
ONIVA05G15390 Oryza nivara ONIVA05G15390 N
OPUNC05G13110 Oryza punctata OPUNC05G13110 N
orange1.1g018292m.g Citrus sinensis orange1.1g018292m.g N
ORGLA05G0129100 Oryza glaberrima ORGLA05G0129100 N
ORUFI05G16140 Oryza rufipogon ORUFI05G16140 N
Pavir.Ca01410 Panicum virgatum Pavir.Ca01410 N
Pavir.Cb01456 Panicum virgatum Pavir.Cb01456 N
PDK_20s1313371g002 Phoenix dactylifera PDK_20s1313371g002 N
PK12273.1 Cannabis sativa PK12273.1 N
PK15670.1 Cannabis sativa PK15670.1 N
PK18855.1 Cannabis sativa PK18855.1 N
POPTR_0006s04820 Populus trichocarpa POPTR_0006s04820 N
POPTR_0016s05670 Populus trichocarpa POPTR_0016s05670 N
PRUPE_ppa006202mg Prunus persica PRUPE_ppa006202mg N
SapurV1A.0037s0030 Salix purpurea SapurV1A.0037s0030 N
SapurV1A.3066s0020 Salix purpurea SapurV1A.3066s0020 N
Sb09g019190 Sorghum bicolor Sb09g019190 N
Si021952m.g Setaria italica Si021952m.g N
Solyc02g030210.2 Solanum lycopersicum Solyc02g030210.2 N
TCM_024554 Theobroma cacao TCM_024554 N
Thhalv10016812m.g Eutrema salsugineum Thhalv10016812m.g N
Traes_6AS_53FA034C9 Triticum aestivum Traes_6AS_53FA034C9 N
TRIUR3_07433 Triticum urartu TRIUR3_07433 N
VIT_08s0007g08580 Vitis vinifera VIT_08s0007g08580 N