POPTR_0006s05600 (Populus trichocarpa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 POPTR_0006s05600 T043820_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.894 0.961
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.868 0.824
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.868 0.824
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.868 0.824
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.855 0.804
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.855 0.804
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.855 0.804
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.855 0.784
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.842 0.765
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.842 0.765
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.839 0.725
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.839 0.706
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.839 0.706
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s05600.1 bHLH 184 234

Links

Other bHLH family TFs
Other Populus trichocarpa TFs

761 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29676.m001633 Ricinus communis 29676.m001633 I
29929.m004500 Ricinus communis 29929.m004500 I
AC233943.1_FG002 Zea mays AC233943.1_FG002 I
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I
LBD6 Arabidopsis thaliana AT1G65620 D
LBD10 Arabidopsis thaliana AT2G23660 I
LBD36 Arabidopsis thaliana AT5G66870 I
BGIOSGA002306 Oryza indica BGIOSGA002306 I
LBD6 Oryza indica BGIOSGA004955 I
BGIOSGA013119 Oryza indica BGIOSGA013119 I
BGIOSGA018046 Oryza indica BGIOSGA018046 I
Bo2g051420 Brassica oleracea Bo2g051420 I
Bo2g167820 Brassica oleracea Bo2g167820 I
Bo4g151770 Brassica oleracea Bo4g151770 I
Bo7g064360 Brassica oleracea Bo7g064360 I
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I
Bra012112 Brassica rapa Bra012112 I
Bra032153 Brassica rapa Bra032153 I
Bra039733 Brassica rapa Bra039733 I
BRADI1G14677 Brachypodium distachyon BRADI1G14677 N
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I
Carubv10020974m.g Capsella rubella Carubv10020974m.g I
Carubv10026811m.g Capsella rubella Carubv10026811m.g I
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I
cassava16840.m1 Manihot esculenta cassava16840.m1 I
cassava16846.m1 Manihot esculenta cassava16846.m1 I
cassava32690.m1 Manihot esculenta cassava32690.m1 I
cassava32691.m1 Manihot esculenta cassava32691.m1 I
Ca_02125 Cicer arietinum Ca_02125 I
Ca_11161 Cicer arietinum Ca_11161 I
Ca_18206 Cicer arietinum Ca_18206 N
Ca_20200 Cicer arietinum Ca_20200 I
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I
Cla005851 Citrullus lanatus Cla005851 I
Cla020438 Citrullus lanatus Cla020438 I
Cucsa.178830 Cucumis sativus Cucsa.178830 I
Cucsa.250570 Cucumis sativus Cucsa.250570 I
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I
F775_20715 Aegilops tauschii F775_20715 I
F775_21760 Aegilops tauschii F775_21760 I
F775_25656 Aegilops tauschii F775_25656 I
F775_33210 Aegilops tauschii F775_33210 I
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I
GLYMA01G39060 Glycine max GLYMA01G39060 I
GLYMA04G11991 Glycine max GLYMA04G11991 I
GLYMA05G09950 Glycine max GLYMA05G09950 I
GLYMA06G11181 Glycine max GLYMA06G11181 I
GLYMA11G06210 Glycine max GLYMA11G06210 I
GLYMA11G17890 Glycine max GLYMA11G17890 I
GLYMA13G26020 Glycine max GLYMA13G26020 I
GLYMA15G36310 Glycine max GLYMA15G36310 I
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I
GRMZM2G118250 Zea mays GRMZM2G118250 I
GRMZM2G133806 Zea mays GRMZM2G133806 I
GRMZM2G154320 Zea mays GRMZM2G154320 N
GRMZM2G362627 Zea mays GRMZM2G362627 I
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I
LPERR01G04140 Leersia perrieri LPERR01G04140 I
LPERR01G34430 Leersia perrieri LPERR01G34430 I
LPERR03G21590 Leersia perrieri LPERR03G21590 I
Lus10005313.g Linum usitatissimum Lus10005313.g I
Lus10013610.g Linum usitatissimum Lus10013610.g I
Lus10016769.g Linum usitatissimum Lus10016769.g I
Lus10022463.g Linum usitatissimum Lus10022463.g I
MDP0000197526 Malus domestica MDP0000197526 I
MDP0000273432 Malus domestica MDP0000273432 I
MDP0000310871 Malus domestica MDP0000310871 I
MDP0000562305 Malus domestica MDP0000562305 I
MDP0000643326 Malus domestica MDP0000643326 I
MDP0000777060 Malus domestica MDP0000777060 I
mgf004296m Mimulus guttatus mgf004296m I
mgf014755m Mimulus guttatus mgf014755m I
MLOC_61156 Hordeum vulgare MLOC_61156 I
MLOC_72525 Hordeum vulgare MLOC_72525 I
MTR_3g073690 Medicago truncatula MTR_3g073690 I
MTR_3g452660 Medicago truncatula MTR_3g452660 N
MTR_5g017950 Medicago truncatula MTR_5g017950 I
MTR_8g040900 Medicago truncatula MTR_8g040900 I
OB01G14220 Oryza brachyantha OB01G14220 I
OB01G48740 Oryza brachyantha OB01G48740 I
OB05G24560 Oryza brachyantha OB05G24560 I
OBART01G04470 Oryza barthii OBART01G04470 I
OBART01G39990 Oryza barthii OBART01G39990 I
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I
OLONG_016086 Oryza longistaminata OLONG_016086 I
OMERI01G04420 Oryza meridionalis OMERI01G04420 I
OMERI01G36900 Oryza meridionalis OMERI01G36900 I
ONIVA01G04930 Oryza nivara ONIVA01G04930 I
ONIVA01G44840 Oryza nivara ONIVA01G44840 I
ONIVA11G15310 Oryza nivara ONIVA11G15310 I
OPUNC01G38680 Oryza punctata OPUNC01G38680 I
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I
OS01G0169400 Oryza sativa OS01G0169400 I
LBD6 Oryza sativa OS01G0889400 I
OS03G0612400 Oryza sativa OS03G0612400 I
OS05G0417000 Oryza sativa OS05G0417000 I
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I
Pavir.J03238 Panicum virgatum Pavir.J03238 I
Pavir.J03307 Panicum virgatum Pavir.J03307 I
Pavir.J09541 Panicum virgatum Pavir.J09541 I
Pavir.J16692 Panicum virgatum Pavir.J16692 I
Pavir.J22284 Panicum virgatum Pavir.J22284 I
Pavir.J38993 Panicum virgatum Pavir.J38993 I
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I
PK13228.1 Cannabis sativa PK13228.1 I
PK17019.1 Cannabis sativa PK17019.1 I
PK18922.1 Cannabis sativa PK18922.1 I
Pm010483 Prunus mume Pm010483 I
Pm026450 Prunus mume Pm026450 I
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I
Sb01g014650 Sorghum bicolor Sb01g014650 I
Sb03g004590 Sorghum bicolor Sb03g004590 I
Sb03g042310 Sorghum bicolor Sb03g042310 I
Sb09g020440 Sorghum bicolor Sb09g020440 I
LBD10 Arabidopsis lyrata scaffold_400352.1 I
Si002599m.g Setaria italica Si002599m.g I
Si002632m.g Setaria italica Si002632m.g I
Si024114m.g Setaria italica Si024114m.g I
Si036905m.g Setaria italica Si036905m.g I
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I
TCM_000560 Theobroma cacao TCM_000560 I
TCM_024217 Theobroma cacao TCM_024217 I
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I
Traes_1DL_B8551270A Triticum aestivum Traes_1DL_B8551270A I
Traes_4AL_C060BF9F6 Triticum aestivum Traes_4AL_C060BF9F6 I
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I
TRIUR3_06488 Triticum urartu TRIUR3_06488 I
TRIUR3_23928 Triticum urartu TRIUR3_23928 I
TRIUR3_32863 Triticum urartu TRIUR3_32863 I
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I
AS2 Vitis vinifera VIT_00s0340g00090 I
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I
VIT_07s0197g00030 Vitis vinifera VIT_07s0197g00030 I
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I