Solyc01g010130.2 (Solanum lycopersicum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Solyc01g010130.2 T045004_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.914 0.980
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.914 0.941
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.902 0.941
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.902 0.902
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.902 0.902
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.902 0.863
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.888 0.902
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.875 0.843
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.875 0.843
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.864 0.804
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.864 0.784
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.864 0.784
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.842 0.745
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc01g010130.2.1 bHLH 354 404

Links

Other bHLH family TFs
Other Solanum lycopersicum TFs

901 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28582.m000316 Ricinus communis 28582.m000316 N
28582.m000317 Ricinus communis 28582.m000317 N
28582.m000318 Ricinus communis 28582.m000318 N
30226.m001993 Ricinus communis 30226.m001993 N
AMTR_s00022p00190540 Amborella trichopoda AMTR_s00022p00190540 I
AMTR_s00025p00224230 Amborella trichopoda AMTR_s00025p00224230 I
Aquca_004_00369 Aquilegia coerulea Aquca_004_00369 I
Aquca_009_00165 Aquilegia coerulea Aquca_009_00165 N
Aquca_012_00204 Aquilegia coerulea Aquca_012_00204 N
AT5G06800 Arabidopsis thaliana AT5G06800 N
BGIOSGA014151 Oryza indica BGIOSGA014151 I
Bo2g007410 Brassica oleracea Bo2g007410 N
Bo3g004040 Brassica oleracea Bo3g004040 N
Bo9g175820 Brassica oleracea Bo9g175820 I
Bostr.13129s0292 Boechera stricta Bostr.13129s0292 N
Bra005912 Brassica rapa Bra005912 N
Bra009228 Brassica rapa Bra009228 I
Bra028717 Brassica rapa Bra028717 N
BRADI5G25320 Brachypodium distachyon BRADI5G25320 I
Cagra.8005s0016 Capsella grandiflora Cagra.8005s0016 N
Carubv10003217m.g Capsella rubella Carubv10003217m.g N
cassava12253.valid.m1 Manihot esculenta cassava12253.valid.m1 N
cassava12254.valid.m1 Manihot esculenta cassava12254.valid.m1 N
cassava12255.valid.m1 Manihot esculenta cassava12255.valid.m1 N
cassava16780.m1 Manihot esculenta cassava16780.m1 I
cassava39743.m1 Manihot esculenta cassava39743.m1 N
Ca_07304 Cicer arietinum Ca_07304 I
Ca_14198 Cicer arietinum Ca_14198 N
chr1.LjB18K24.110.nd Lotus japonicus chr1.LjB18K24.110.nd I
chr1.LjT38A19.30.nc Lotus japonicus chr1.LjT38A19.30.nc N
chr5.LjT42I01.50.nd Lotus japonicus chr5.LjT42I01.50.nd I
Ciclev10004984m.g Citrus clementina Ciclev10004984m.g I
Ciclev10012014m.g Citrus clementina Ciclev10012014m.g N
Ciclev10015819m.g Citrus clementina Ciclev10015819m.g I
Ciclev10033388m.g Citrus clementina Ciclev10033388m.g N
Cla011853 Citrullus lanatus Cla011853 N
Cucsa.353890 Cucumis sativus Cucsa.353890 N
estExt_fgenesh1_pg.C_1660037 Physcomitrella patens estExt_fgenesh1_pg.C_1660037 I
estExt_fgenesh1_pg.C_4900005 Physcomitrella patens estExt_fgenesh1_pg.C_4900005 I
estExt_fgenesh1_pg.C_550102 Physcomitrella patens estExt_fgenesh1_pg.C_550102 I
est_orfs.1_306_4269596:1 Micromonas pusilla est_orfs.1_306_4269596:1 I
Eucgr.A02444 Eucalyptus grandis Eucgr.A02444 N
evm.TU.supercontig_85.82 Carica papaya evm.TU.supercontig_85.82 N
fgenesh2_kg.6__627__AT5G06800.1 Arabidopsis lyrata fgenesh2_kg.6__627__AT5G06800.1 N
fgenesh2_pg.scaffold_82000058 Physcomitrella patens fgenesh2_pg.scaffold_82000058 I
gene22647-v1.0-hybrid Fragaria vesca gene22647-v1.0-hybrid N
GLYMA02G30800 Glycine max GLYMA02G30800 N
GLYMA03G29940 Glycine max GLYMA03G29940 I
GLYMA09G17404 Glycine max GLYMA09G17404 N
GLYMA18G43130 Glycine max GLYMA18G43130 I
GLYMA19G32850 Glycine max GLYMA19G32850 I
Gorai.001G225500 Gossypium raimondii Gorai.001G225500 N
Gorai.002G225400 Gossypium raimondii Gorai.002G225400 N
Gorai.006G142000 Gossypium raimondii Gorai.006G142000 N
Gorai.009G329400 Gossypium raimondii Gorai.009G329400 I
GRMZM2G124495 Zea mays GRMZM2G124495 I
GSMUA_Achr4G19300_001 Musa acuminata GSMUA_Achr4G19300_001 I
GSMUA_Achr7G06370_001 Musa acuminata GSMUA_Achr7G06370_001 I
LPERR04G24240 Leersia perrieri LPERR04G24240 I
Lus10021035.g Linum usitatissimum Lus10021035.g N
Lus10022886.g Linum usitatissimum Lus10022886.g I
Lus10023816.g Linum usitatissimum Lus10023816.g N
MDP0000121180 Malus domestica MDP0000121180 N
MDP0000142146 Malus domestica MDP0000142146 I
MDP0000179986 Malus domestica MDP0000179986 N
MDP0000182154 Malus domestica MDP0000182154 I
MDP0000184307 Malus domestica MDP0000184307 N
MDP0000253656 Malus domestica MDP0000253656 N
MDP0000280005 Malus domestica MDP0000280005 N
mgf007532m Mimulus guttatus mgf007532m N
mgf007985m Mimulus guttatus mgf007985m N
mgf017208m Mimulus guttatus mgf017208m N
MTR_7g068600 Medicago truncatula MTR_7g068600 N
MTR_7g093030 Medicago truncatula MTR_7g093030 N
OB04G35670 Oryza brachyantha OB04G35670 I
OBART04G28680 Oryza barthii OBART04G28680 I
OGLUM04G28560 Oryza glumaepatula OGLUM04G28560 I
OLONG_005000 Oryza longistaminata OLONG_005000 I
OMERI04G24260 Oryza meridionalis OMERI04G24260 I
ONIVA04G27220 Oryza nivara ONIVA04G27220 I
OPUNC04G26200 Oryza punctata OPUNC04G26200 I
orange1.1g014308m.g Citrus sinensis orange1.1g014308m.g I
orange1.1g018583m.g Citrus sinensis orange1.1g018583m.g N
orange1.1g035950m.g Citrus sinensis orange1.1g035950m.g N
orange1.1g038268m.g Citrus sinensis orange1.1g038268m.g I
ORGLA04G0249600 Oryza glaberrima ORGLA04G0249600 I
ORUFI04G30350 Oryza rufipogon ORUFI04G30350 I
OS04G0665600 Oryza sativa OS04G0665600 I
Pavir.Ga00160 Panicum virgatum Pavir.Ga00160 I
Pavir.J05593 Panicum virgatum Pavir.J05593 I
PDK_20s1349221g001 Phoenix dactylifera PDK_20s1349221g001 N
PGSC0003DMG400011435 Solanum tuberosum PGSC0003DMG400011435 N
PGSC0003DMG400023674 Solanum tuberosum PGSC0003DMG400023674 N
PK00827.1 Cannabis sativa PK00827.1 N
Pm025973 Prunus mume Pm025973 N
POPTR_0001s23560 Populus trichocarpa POPTR_0001s23560 N
POPTR_0006s20540 Populus trichocarpa POPTR_0006s20540 N
POPTR_0016s04830 Populus trichocarpa POPTR_0016s04830 N
PRUPE_ppa016067mg Prunus persica PRUPE_ppa016067mg N
SapurV1A.0008s0360 Salix purpurea SapurV1A.0008s0360 N
SapurV1A.0018s0530 Salix purpurea SapurV1A.0018s0530 N
SapurV1A.0251s0040 Salix purpurea SapurV1A.0251s0040 N
SapurV1A.4156s0010 Salix purpurea SapurV1A.4156s0010 N
Sb05g000480 Sorghum bicolor Sb05g000480 I
Sb06g031970 Sorghum bicolor Sb06g031970 I
SELMODRAFT_414222 Selaginella moellendorffii SELMODRAFT_414222 I
SELMODRAFT_422768 Selaginella moellendorffii SELMODRAFT_422768 I
SELMODRAFT_426960 Selaginella moellendorffii SELMODRAFT_426960 I
SELMODRAFT_438636 Selaginella moellendorffii SELMODRAFT_438636 I
Si022099m.g Setaria italica Si022099m.g I
Solyc02g080860.1 Solanum lycopersicum Solyc02g080860.1 I
Solyc10g078720.1 Solanum lycopersicum Solyc10g078720.1 N
Solyc10g080460.1 Solanum lycopersicum Solyc10g080460.1 N
TCM_024886 Theobroma cacao TCM_024886 N
Thhalv10013850m.g Eutrema salsugineum Thhalv10013850m.g N
VIT_08s0007g06180 Vitis vinifera VIT_08s0007g06180 I
VIT_08s0007g06310 Vitis vinifera VIT_08s0007g06310 I
VIT_13s0067g01500 Vitis vinifera VIT_13s0067g01500 I
VIT_13s0156g00370 Vitis vinifera VIT_13s0156g00370 N
VIT_13s0156g00390 Vitis vinifera VIT_13s0156g00390 I