Cagra.20893s0010 (Capsella grandiflora)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cagra.20893s0010 T049275_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
UNE10
M01705_2.00 		Arabidopsis thaliana
HCACGTGM
KCACGTGD		 PBM
Weirauch et al.(2014)
pTH8112 		0.914 1.000
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.843 0.490
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.843 0.531
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.843 0.531
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.843 0.531
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.843 0.531
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.843 0.490
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.843 0.490
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.843 0.490
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.840 0.673
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.840 0.673
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.840 0.673
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.840 0.673
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.840 0.673
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.840 0.673
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.20893s0010.1.p bHLH 216 264

Links

Other bHLH family TFs
Other Capsella grandiflora TFs

422 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I 0.000
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.000
STOP1 Arabidopsis thaliana AT1G34370 D 0.000
BGIOSGA004888 Oryza indica BGIOSGA004888 I 0.000
Bo8g027000 Brassica oleracea Bo8g027000 I 0.000
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.000
Bra040971 Brassica rapa Bra040971 I 0.000
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I 0.000
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.000
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.000
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I 0.000
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.000
Ca_04300 Cicer arietinum Ca_04300 I 0.000
Ciclev10000850m.g Citrus clementina Ciclev10000850m.g I 0.000
Cla016623 Citrullus lanatus Cla016623 I 0.000
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.000
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.000
F775_04088 Aegilops tauschii F775_04088 I 0.000
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.000
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.000
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.000
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.000
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.000
Gorai.006G131700 Gossypium raimondii Gorai.006G131700 I 0.000
GRMZM2G075956 Zea mays GRMZM2G075956 I 0.000
GRMZM2G129428 Zea mays GRMZM2G129428 I 0.000
GSMUA_Achr10G15970_001 Musa acuminata GSMUA_Achr10G15970_001 I 0.000
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.000
LPERR01G33350 Leersia perrieri LPERR01G33350 I 0.000
Lus10009435.g Linum usitatissimum Lus10009435.g I 0.000
MDP0000141403 Malus domestica MDP0000141403 I 0.000
MDP0000199559 Malus domestica MDP0000199559 I 0.000
MDP0000453148 Malus domestica MDP0000453148 I 0.000
MDP0000551046 Malus domestica MDP0000551046 I 0.000
MDP0000807856 Malus domestica MDP0000807856 I 0.000
mgf000060m Mimulus guttatus mgf000060m I 0.000
MLOC_10987 Hordeum vulgare MLOC_10987 I 0.000
OB01G47470 Oryza brachyantha OB01G47470 I 0.000
OBART01G38810 Oryza barthii OBART01G38810 I 0.000
OLONG_020555 Oryza longistaminata OLONG_020555 I 0.000
ONIVA01G43630 Oryza nivara ONIVA01G43630 I 0.000
OPUNC01G37530 Oryza punctata OPUNC01G37530 I 0.000
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I 0.000
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I 0.000
OS01G0871200 Oryza sativa OS01G0871200 I 0.000
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.000
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.000
Pavir.J14096 Panicum virgatum Pavir.J14096 I 0.000
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.000
PK23301.1 Cannabis sativa PK23301.1 I 0.000
Pm022201 Prunus mume Pm022201 I 0.000
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.000
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.000
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.000
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.000
Sb03g041170 Sorghum bicolor Sb03g041170 I 0.000
Si001053m.g Setaria italica Si001053m.g I 0.000
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.000
TCM_036719 Theobroma cacao TCM_036719 I 0.000
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.000
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I 0.000
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I 0.000
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I 0.000
TRIUR3_13796 Triticum urartu TRIUR3_13796 I 0.000
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.000