gene07355-v1.0-hybrid (Fragaria vesca)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 gene07355-v1.0-hybrid T049832_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.896 0.760
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.868 0.600
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.844 0.580
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.844 0.580
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.844 0.580
MYC4
M01707_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8260 		0.844 0.560
MYC3
M01712_2.00 		Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK		 PBM
Weirauch et al.(2014)
pTH8854 		0.844 0.560
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna07355.1-v1.0-hybrid bHLH 158 207

Links

Other bHLH family TFs
Other Fragaria vesca TFs

473 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL014322 Aedes aegypti AAEL014322 I
AALB008334 Anopheles albimanus AALB008334 I
AARA002094 Anopheles arabiensis AARA002094 I
AATE018889 Anopheles atroparvus AATE018889 I
ACHR010174 Anopheles christyi ACHR010174 I
ACOM034431 Anopheles coluzzii ACOM034431 I
ACUA006973 Anopheles culicifacies ACUA006973 I
ADAC002492 Anopheles darlingi ADAC002492 I
ADIR010448 Anopheles dirus ADIR010448 I
AEPI006062 Anopheles epiroticus AEPI006062 I
AFAF001067 Anopheles farauti AFAF001067 I
AFUN011634 Anopheles funestus AFUN011634 I
AMAM006832 Anopheles maculatus AMAM006832 I
AMEM001613 Anopheles merus AMEM001613 I
AMIN003460 Anopheles minimus AMIN003460 I
AQUA000514 Anopheles quadriannulatus AQUA000514 I
ASTEI05690 Anopheles stephensi ASTEI05690 I
CapteG36721 Capitella teleta CapteG36721 I
Cflo_03885--XP_001120527.1_APIME Camponotus floridanus Cflo_03885--XP_001120527.1_APIME I
CGI_10007380 Crassostrea gigas CGI_10007380 I
CLEC002330 Cimex lectularius CLEC002330 I
CPIJ005345 Culex quinquefasciatus CPIJ005345 I
CpipJ_CPIJ005345 Culex pipiens CpipJ_CPIJ005345 I
csin100742 Clonorchis sinensis csin100742 I
D915_09890 Fasciola hepatica D915_09890 I
D917_06339 Trichinella nativa D917_06339 I
D918_04086 Trichuris suis D918_04086 I
ECANG7_02004 Echinococcus canadensis ECANG7_02004 I
ECPE_0001678601 Echinostoma caproni ECPE_0001678601 I
EFV52759 Trichinella spiralis EFV52759 I
EmuJ_001053100 Echinococcus multilocularis EmuJ_001053100 I
myod1 Tetraodon nigroviridis ENSTNIG00000002808 I
estExt_fgenesh2_pg.C_2260029 Branchiostoma floridae estExt_fgenesh2_pg.C_2260029 I
estExt_gwp.C_290160 Branchiostoma floridae estExt_gwp.C_290160 I
EVEC_0000720901 Enterobius vermicularis EVEC_0000720901 I
nau Drosophila melanogaster FBgn0002922 D
GA10192 Drosophila pseudoobscura FBgn0070251 I
GF18746 Drosophila ananassae FBgn0095763 I
GG12413 Drosophila erecta FBgn0104701 I
GH13904 Drosophila grimshawi FBgn0121380 I
GI24830 Drosophila mojavensis FBgn0147551 I
GL13832 Drosophila persimilis FBgn0151437 I
GM23547 Drosophila sechellia FBgn0178413 I
GD18361 Drosophila simulans FBgn0189889 I
GJ24474 Drosophila virilis FBgn0211554 I
GK22777 Drosophila willistoni FBgn0224749 I
GE23932 Drosophila yakuba FBgn0241076 I
fgenesh2_pg.scaffold_226000031 Branchiostoma floridae fgenesh2_pg.scaffold_226000031 I
fgenesh2_pg.scaffold_226000032 Branchiostoma floridae fgenesh2_pg.scaffold_226000032 I
fgenesh2_pg.scaffold_29000123 Branchiostoma floridae fgenesh2_pg.scaffold_29000123 I
GB55306 Apis mellifera GB55306 I
HmN_000553800 Hymenolepis microstoma HmN_000553800 I
HNAJ_0001324201 Hymenolepis nana HNAJ_0001324201 I
Hsal_05065--XP_001120527.1_APIME Harpegnathos saltator Hsal_05065--XP_001120527.1_APIME I
LCUP007809 Lucilia cuprina LCUP007809 I
LDEC009949 Leptinotarsa decemlineata LDEC009949 I
LLOJ004446 Lutzomyia longipalpis LLOJ004446 I
MCOS_0000168001 Mesocestoides corti MCOS_0000168001 I
nRc.2.0.1.g24248 Romanomermis culicivorax nRc.2.0.1.g24248 I
NV10294 Nasonia vitripennis NV10294 I
Ocbimv22002759m.g Octopus bimaculoides Ocbimv22002759m.g I
PHUM424120 Pediculus humanus PHUM424120 I
RPRC009735 Rhodnius prolixus RPRC009735 I
Sakowv30008488m.g Saccoglossus kowalevskii Sakowv30008488m.g I
SBAD_0001285401 Soboliphyme baturini SBAD_0001285401 I
Sjc_0011830 Schistosoma japonicum Sjc_0011830 I
Smp_167400 Schistosoma mansoni Smp_167400 I
SMU15001149 Schmidtea mediterranea SMU15001149 I
SMUV_0000995901 Syphacia muris SMUV_0000995901 I
SPER_0001779001 Spirometra erinaceieuropaei SPER_0001779001 I
SPER_0002215301 Spirometra erinaceieuropaei SPER_0002215301 I
SPU_021119 Strongylocentrotus purpuratus SPU_021119 I
SSLN_0000613901 Schistocephalus solidus SSLN_0000613901 I
T265_10140 Opisthorchis viverrini T265_10140 I
TASK_0000583801 Taenia asiatica TASK_0000583801 I
TC015855 Tribolium castaneum TC015855 I
TMUE_s0045001800 Trichuris muris TMUE_s0045001800 I
TRE_0000306101 Trichobilharzia regenti TRE_0000306101 I
TsM_000079400 Taenia solium TsM_000079400 I
TTRE_0000002701 Trichuris trichiura TTRE_0000002701 I
YQE_11476 Dendroctonus ponderosae YQE_11476 I