MDP0000401086 (Malus domestica)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 MDP0000401086 T050459_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.914 1.000
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.890 0.896
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.890 0.896
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.890 0.896
MYC4
M01707_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8260 		0.890 0.875
MYC3
M01712_2.00 		Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK		 PBM
Weirauch et al.(2014)
pTH8854 		0.890 0.875
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.882 0.625
BHLH13
M01698_2.00 		Arabidopsis thaliana
MCACGTGV
BCACGTGK		 PBM
Weirauch et al.(2014)
pTH7565 		0.879 0.875
UNE10
M01705_2.00 		Arabidopsis thaliana
HCACGTGM
KCACGTGD		 PBM
Weirauch et al.(2014)
pTH8112 		0.843 0.500
PK09702.1
M01124_2.00 		Cannabis sativa
GCACGTGV
BCACGTGC		 PBM
Lambert et al.(2019)
pTH11374 		0.840 0.625
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000401086 bHLH 355 402

Links

Other bHLH family TFs
Other Malus domestica TFs

672 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29900.m001555 Ricinus communis 29900.m001555 I
30072.m000927 Ricinus communis 30072.m000927 I
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I
Aquca_004_00664 Aquilegia coerulea Aquca_004_00664 I
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I
WUS Arabidopsis thaliana AT2G17950 D
WOX9 Arabidopsis thaliana AT2G33880 I
WOX11 Arabidopsis thaliana AT3G03660 D
WOX12 Arabidopsis thaliana AT5G17810 I
WOX8 Arabidopsis thaliana AT5G45980 I
BGIOSGA001059 Oryza indica BGIOSGA001059 I
WOX6 Oryza indica BGIOSGA010824 I
BGIOSGA020366 Oryza indica BGIOSGA020366 I
BGIOSGA026413 Oryza indica BGIOSGA026413 I
WOX10 Oryza indica BGIOSGA027391 I
Bo11772s010 Brassica oleracea Bo11772s010 I
Bo1g153650 Brassica oleracea Bo1g153650 I
Bo2g013980 Brassica oleracea Bo2g013980 I
Bo2g062660 Brassica oleracea Bo2g062660 I
Bo2g127670 Brassica oleracea Bo2g127670 I
Bo3g027500 Brassica oleracea Bo3g027500 I
Bo3g093850 Brassica oleracea Bo3g093850 I
Bo4g041330 Brassica oleracea Bo4g041330 I
Bo5g148780 Brassica oleracea Bo5g148780 I
Bo7g012820 Brassica oleracea Bo7g012820 I
Bo8g106350 Brassica oleracea Bo8g106350 I
Bo9g026310 Brassica oleracea Bo9g026310 I
Bo9g070070 Brassica oleracea Bo9g070070 I
Bo9g159820 Brassica oleracea Bo9g159820 I
Bostr.18351s0261 Boechera stricta Bostr.18351s0261 I
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I
Bra002108 Brassica rapa Bra002108 I
Bra005464 Brassica rapa Bra005464 I
Bra017448 Brassica rapa Bra017448 I
Bra022008 Brassica rapa Bra022008 I
Bra022960 Brassica rapa Bra022960 I
Bra023638 Brassica rapa Bra023638 I
Bra024485 Brassica rapa Bra024485 I
Bra026791 Brassica rapa Bra026791 I
Bra031980 Brassica rapa Bra031980 I
Bra036446 Brassica rapa Bra036446 I
Bra037245 Brassica rapa Bra037245 I
Bra039894 Brassica rapa Bra039894 I
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I
Cagra.24049s0002 Capsella grandiflora Cagra.24049s0002 I
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I
Carubv10003719m.g Capsella rubella Carubv10003719m.g I
Carubv10016081m.g Capsella rubella Carubv10016081m.g I
Carubv10016192m.g Capsella rubella Carubv10016192m.g I
Carubv10025224m.g Capsella rubella Carubv10025224m.g I
Carubv10027735m.g Capsella rubella Carubv10027735m.g I
cassava15562.m1 Manihot esculenta cassava15562.m1 I
cassava40675.m1 Manihot esculenta cassava40675.m1 I
cassava4506.m1 Manihot esculenta cassava4506.m1 I
cassava4770.m1 Manihot esculenta cassava4770.m1 I
Ca_00357 Cicer arietinum Ca_00357 I
Ca_06365 Cicer arietinum Ca_06365 I
Ca_08180 Cicer arietinum Ca_08180 I
Ca_19701 Cicer arietinum Ca_19701 I
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I
Ciclev10027270m.g Citrus clementina Ciclev10027270m.g I
Cla009819 Citrullus lanatus Cla009819 I
CM1489.70.nc Lotus japonicus CM1489.70.nc I
Cucsa.046640 Cucumis sativus Cucsa.046640 I
Cucsa.336980 Cucumis sativus Cucsa.336980 I
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I
F775_11947 Aegilops tauschii F775_11947 I
F775_22811 Aegilops tauschii F775_22811 I
F775_23099 Aegilops tauschii F775_23099 I
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I
gene28935-v1.0-hybrid Fragaria vesca gene28935-v1.0-hybrid I
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I
GLYMA03G01000 Glycine max GLYMA03G01000 I
GLYMA07G32430 Glycine max GLYMA07G32430 I
GLYMA10G08030 Glycine max GLYMA10G08030 I
GLYMA13G21860 Glycine max GLYMA13G21860 I
GLYMA13G24150 Glycine max GLYMA13G24150 I
GLYMA19G29660 Glycine max GLYMA19G29660 I
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I
GRMZM2G031882 Zea mays GRMZM2G031882 I
GRMZM2G133972 Zea mays GRMZM2G133972 I
GRMZM2G162481 Zea mays GRMZM2G162481 I
GRMZM2G170958 Zea mays GRMZM2G170958 I
GRMZM2G314064 Zea mays GRMZM2G314064 I
GRMZM2G409881 Zea mays GRMZM2G409881 I
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I
LPERR01G22080 Leersia perrieri LPERR01G22080 I
LPERR03G13850 Leersia perrieri LPERR03G13850 I
LPERR07G23470 Leersia perrieri LPERR07G23470 I
LPERR07G23520 Leersia perrieri LPERR07G23520 I
Lus10005282.g Linum usitatissimum Lus10005282.g I
MDP0000136426 Malus domestica MDP0000136426 I
MDP0000232004 Malus domestica MDP0000232004 I
MDP0000524885 Malus domestica MDP0000524885 I
MDP0000729328 Malus domestica MDP0000729328 I
mgf001579m Mimulus guttatus mgf001579m I
mgf016673m Mimulus guttatus mgf016673m I
mgf017527m Mimulus guttatus mgf017527m I
MLOC_65745 Hordeum vulgare MLOC_65745 I
MLOC_6669 Hordeum vulgare MLOC_6669 I
MLOC_7925 Hordeum vulgare MLOC_7925 I
MTR_2g015000 Medicago truncatula MTR_2g015000 I
MTR_4g088070 Medicago truncatula MTR_4g088070 I
MTR_4g088080 Medicago truncatula MTR_4g088080 I
MTR_6g027390 Medicago truncatula MTR_6g027390 I
MTR_7g025010 Medicago truncatula MTR_7g025010 I
MTR_7g086940 Medicago truncatula MTR_7g086940 I
OB01G35000 Oryza brachyantha OB01G35000 I
OB08G17020 Oryza brachyantha OB08G17020 I
OB10G14840 Oryza brachyantha OB10G14840 I
OBART01G25820 Oryza barthii OBART01G25820 I
OBART03G15820 Oryza barthii OBART03G15820 I
OBART05G25900 Oryza barthii OBART05G25900 I
OBART07G26670 Oryza barthii OBART07G26670 I
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I
OMERI01G23480 Oryza meridionalis OMERI01G23480 I
OMERI07G13960 Oryza meridionalis OMERI07G13960 N
OMERI07G23310 Oryza meridionalis OMERI07G23310 I
ONIVA01G29060 Oryza nivara ONIVA01G29060 I
ONIVA05G27800 Oryza nivara ONIVA05G27800 I
ONIVA07G26430 Oryza nivara ONIVA07G26430 I
ONIVA08G08030 Oryza nivara ONIVA08G08030 I
OPUNC03G15320 Oryza punctata OPUNC03G15320 I
OPUNC05G23480 Oryza punctata OPUNC05G23480 I
OPUNC07G25100 Oryza punctata OPUNC07G25100 I
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I
orange1.1g046372m.g Citrus sinensis orange1.1g046372m.g I
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I
ORGLA07G0240100 Oryza glaberrima ORGLA07G0240100 N
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I
OS01G0667450 Oryza sativa OS01G0667450 I
OS03G0325600 Oryza sativa OS03G0325600 I
OS05G0564500 Oryza sativa OS05G0564500 I
OS07G0533201 Oryza sativa OS07G0533201 N
WOX11 Oryza sativa OS07G0684900 I
WOX10 Oryza sativa OS08G0242400 I
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I
Pavir.Eb02702 Panicum virgatum Pavir.Eb02702 I
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I
Pavir.Ib01521 Panicum virgatum Pavir.Ib01521 I
Pavir.J23422 Panicum virgatum Pavir.J23422 I
Pavir.J33010 Panicum virgatum Pavir.J33010 I
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I
PDK_20s1465351g003 Phoenix dactylifera PDK_20s1465351g003 I
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I
PGSC0003DMG400027030 Solanum tuberosum PGSC0003DMG400027030 I
Pm010370 Prunus mume Pm010370 I
Pm025458 Prunus mume Pm025458 I
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I
POPTR_0005s11680 Populus trichocarpa POPTR_0005s11680 I
POPTR_0007s14130 Populus trichocarpa POPTR_0007s14130 I
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I
SapurV1A.0166s0210 Salix purpurea SapurV1A.0166s0210 I
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I
SapurV1A.0487s0060 Salix purpurea SapurV1A.0487s0060 I
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I
Sb01g036670 Sorghum bicolor Sb01g036670 I
Sb02g043300 Sorghum bicolor Sb02g043300 I
Sb07g007600 Sorghum bicolor Sb07g007600 I
Sb09g028562 Sorghum bicolor Sb09g028562 I
WUS Arabidopsis lyrata scaffold_304120.1 I
WOX8 Arabidopsis lyrata scaffold_800245.1 I
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I
Si004249m.g Setaria italica Si004249m.g I
Si015065m.g Setaria italica Si015065m.g I
Si025013m.g Setaria italica Si025013m.g I
Si030836m.g Setaria italica Si030836m.g I
Si039112m.g Setaria italica Si039112m.g I
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I
TCM_025805 Theobroma cacao TCM_025805 I
TCM_029776 Theobroma cacao TCM_029776 I
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I
Thhalv10009654m.g Eutrema salsugineum Thhalv10009654m.g I
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I
TRIUR3_34808 Triticum urartu TRIUR3_34808 I
TRIUR3_34876 Triticum urartu TRIUR3_34876 I
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I