CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10014242m.g
(
Eutrema salsugineum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Thhalv10014242m.g
T051232_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH78
M01713_2.00
Arabidopsis thaliana
GCACGTGC
GCACGTGC
PBM
Weirauch et al.(2014)
pTH7666
0.914
0.922
BPE
M01700_2.00
Arabidopsis thaliana
NCACGTNNN
NNNACGTGN
PBM
Weirauch et al.(2014)
pTH7290
0.901
0.863
BPE
M06726_2.00
Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN
Dap-seq
OMalley et al.(2016)
bHLH31_col
0.901
0.863
BHLH49
M01052_2.00
Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN
PBM
Sullivan et al.(2014)
pTH7309
0.888
0.902
PK06517.1
M01122_2.00
Cannabis sativa
NCACGTGC
GCACGTGN
PBM
Lambert et al.(2019)
pTH10104
0.888
0.902
gw1.270.82.1
M01758_2.00
Physcomitrella patens
NCACGTGH
DCACGTGN
PBM
Weirauch et al.(2014)
pTH8457
0.875
0.882
BHLH74
M06720_2.00
Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS
Dap-seq
OMalley et al.(2016)
bHLH74_col_a
0.875
0.863
BHLH74
M06721_2.00
Arabidopsis thaliana
CACGTGAY
RTCACGTG
Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a
0.875
0.863
BHLH77
M06736_2.00
Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN
Dap-seq
OMalley et al.(2016)
bHLH77_col_a
0.875
0.843
PK05923.1
M01121_2.00
Cannabis sativa
NNNNNNN
NNNNNNN
PBM
Lambert et al.(2019)
pTH11368
0.868
0.765
BEE2
M01708_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8094
0.864
0.804
AT2G18300
M01702_2.00
Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN
PBM
Weirauch et al.(2014)
pTH7289
0.864
0.784
AT2G18300
M06729_2.00
Arabidopsis thaliana
ACTGGT
ACCAGT
Dap-seq
OMalley et al.(2016)
bHLH64_col_a
0.864
0.784
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10014239m
bHLH
153
203
ATDSHSLAERVRREKISERMKTLQNLVPGCNKVTGKALMLDEIIKYVQSLQ
Thhalv10014242m
bHLH
153
203
ATDSHSLAERVRREKISERMKTLQNLVPGCNKVTGKALMLDEIIKYVQSLQ
Links
Other
bHLH
family TFs
Other
Eutrema salsugineum
TFs
885 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Alligator_sinensis_CCG003455.1
Alligator sinensis
Alligator_sinensis_CCG003455.1
I
Cmyd_10007335
Chelonia mydas
Cmyd_10007335
I
ENSAMEG00000006419
Ailuropoda melanoleuca
ENSAMEG00000006419
I
ENSAMXG00000001207
Astyanax mexicanus
ENSAMXG00000001207
I
ZBTB3
Bos taurus
ENSBTAG00000021329
I
ENSBTAP00000051139-D1
Bos grunniens
ENSBTAP00000051139-D1
I
ZBTB3
Canis familiaris
ENSCAFG00000015650
I
ZBTB3
Choloepus hoffmanni
ENSCHOG00000012845
I
ZBTB3
Callithrix jacchus
ENSCJAG00000018693
I
ZBTB3
Cavia porcellus
ENSCPOG00000011665
I
ENSCSAG00000006712
Chlorocebus sabaeus
ENSCSAG00000006712
I
zbtb3
Danio rerio
ENSDARG00000036235
I
ENSDNOG00000006546
Dasypus novemcinctus
ENSDNOG00000006546
I
ZBTB3
Dasypus novemcinctus
ENSDNOG00000043011
I
Zbtb3
Dipodomys ordii
ENSDORG00000015697
I
ZBTB3
Felis catus
ENSFCAG00000027690
I
ZBTB3
Homo sapiens
ENSG00000185670
I
zbtb3
Gasterosteus aculeatus
ENSGACG00000016930
I
ZBTB3
Gorilla gorilla
ENSGGOG00000011735
I
ENSLACG00000006879
Latimeria chalumnae
ENSLACG00000006879
I
ENSLOCG00000001327
Lepisosteus oculatus
ENSLOCG00000001327
I
ENSMEUG00000015659
Macropus eugenii
ENSMEUG00000015659
I
ZBTB3
Microcebus murinus
ENSMICG00000009961
I
ZBTB3
Myotis lucifugus
ENSMLUG00000011020
I
ENSMMUG00000014369
Macaca mulatta
ENSMMUG00000014369
I
ENSMODG00000007952
Monodelphis domestica
ENSMODG00000007952
I
ENSMPUG00000013694
Mustela putorius furo
ENSMPUG00000013694
I
Zbtb3
Mus musculus
ENSMUSG00000071661
D
ENSNLEG00000004096
Nomascus leucogenys
ENSNLEG00000004096
I
ENSOANG00000001309
Ornithorhynchus anatinus
ENSOANG00000001309
I
ENSOARG00000016929
Ovis aries
ENSOARG00000016929
I
ZBTB3
Oryctolagus cuniculus
ENSOCUG00000008921
I
ZBTB3
Otolemur garnettii
ENSOGAG00000011414
I
ENSONIG00000005336
Oreochromis niloticus
ENSONIG00000005336
I
zbtb3
Oryzias latipes
ENSORLG00000002503
N
ENSP00000378286
Macaca fascicularis
ENSP00000378286
I
ENSPANG00000008469
Papio anubis
ENSPANG00000008469
I
ENSPPYG00000003148
Pongo abelii
ENSPPYG00000003148
I
ENSPSIG00000001786
Pelodiscus sinensis
ENSPSIG00000001786
I
ZBTB3
Pan troglodytes
ENSPTRG00000003785
I
ZBTB3
Pteropus vampyrus
ENSPVAG00000003477
I
Zbtb3
Rattus norvegicus
ENSRNOG00000019461
I
ENSSSCG00000025351
Sus scrofa
ENSSSCG00000025351
I
ENSSTOG00000027839
Ictidomys tridecemlineatus
ENSSTOG00000027839
I
zbtb3
Tetraodon nigroviridis
ENSTNIG00000003382
I
zbtb3
Takifugu rubripes
ENSTRUG00000013773
I
ZBTB3
Tursiops truncatus
ENSTTRG00000002477
I
ENSXMAG00000003145
Xiphophorus maculatus
ENSXMAG00000003145
I
Ogr03307
Ophisaurus gracilis
Ogr03307
I
Pvit_09391
Pogona vitticeps
Pvit_09391
I
zbtb3
Xenopus tropicalis
XB-GENE-991962
I