Bo1g007700 (Brassica oleracea)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 Bo1g007700 T057245_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.856 0.903
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.856 0.903
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.817 0.645
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.817 0.645
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.817 0.645
OS08G0471950
M10047_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TRAB1_Q2 		0.817 0.613
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.813 0.645
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.813 0.645
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.807 0.661
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.806 0.613
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.806 0.613
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.806 0.613
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.806 0.613
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.806 0.613
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.806 0.613
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g007700.1 bZIP 336 398

Links

Other bZIP family TFs
Other Brassica oleracea TFs

252 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27751.m000169 Ricinus communis 27751.m000169 N 0.000
Bo01495s010 Brassica oleracea Bo01495s010 N 0.000
Bo4g112590 Brassica oleracea Bo4g112590 N 0.000
Bo6g072500 Brassica oleracea Bo6g072500 N 0.000
Bo6g072510 Brassica oleracea Bo6g072510 N 0.000
Bostr.20505s0055 Boechera stricta Bostr.20505s0055 N 0.000
Bostr.20505s0056 Boechera stricta Bostr.20505s0056 N 0.000
Bra003260 Brassica rapa Bra003260 N 0.000
Bra014654 Brassica rapa Bra014654 N 0.000
Bra014657 Brassica rapa Bra014657 N 0.000
Bra014658 Brassica rapa Bra014658 N 0.000
Cagra.0578s0028 Capsella grandiflora Cagra.0578s0028 N 0.000
Carubv10017770m.g Capsella rubella Carubv10017770m.g N 0.000
BHLH039 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001751 N 0.000
gene27422-v1.0-hybrid Fragaria vesca gene27422-v1.0-hybrid N 0.000
MTR_1g048720 Medicago truncatula MTR_1g048720 N 0.000
Pm028948 Prunus mume Pm028948 N 0.000
Pm028949 Prunus mume Pm028949 N 0.000
Pm031098 Prunus mume Pm031098 N 0.000
Pm031103 Prunus mume Pm031103 N 0.000
POPTR_0006s03560 Populus trichocarpa POPTR_0006s03560 N 0.000
POPTR_0006s03590 Populus trichocarpa POPTR_0006s03590 N 0.000
POPTR_0016s03680 Populus trichocarpa POPTR_0016s03680 N 0.000
PRUPE_ppa016095mg Prunus persica PRUPE_ppa016095mg N 0.000
PRUPE_ppa017407mg Prunus persica PRUPE_ppa017407mg N 0.000
PRUPE_ppa018670mg Prunus persica PRUPE_ppa018670mg N 0.000
SapurV1A.0159s0010 Salix purpurea SapurV1A.0159s0010 N 0.000
SapurV1A.0196s0420 Salix purpurea SapurV1A.0196s0420 N 0.000
SapurV1A.0196s0430 Salix purpurea SapurV1A.0196s0430 N 0.000
Thhalv10006189m.g Eutrema salsugineum Thhalv10006189m.g N 0.000
Thhalv10006191m.g Eutrema salsugineum Thhalv10006191m.g N 0.000
VIT_08s0007g05300 Vitis vinifera VIT_08s0007g05300 N 0.000