Gfo_R004700 (Geospiza fortis)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Gfo_R004700 T070207_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MAFF
M02853_2.00 		Homo sapiens
WTGCTGASTCAGCAN
NTGCTGASTCAGCAW		 SELEX
Jolma et al.(2013)
MAFF_1 		0.962 0.902
MAFF
M04357_2.00 		Homo sapiens
NYGCTGASTCAGCRN
NYGCTGASTCAGCRN		 SELEX
Yin et al.(2017)
MAFF_eDBD_HT-SELEX_1 		0.962 0.902
MAFF
M04358_2.00 		Homo sapiens
NYGCTKACGTMAGCRN
NYGCTKACGTMAGCRN		 SELEX
Yin et al.(2017)
MAFF_eDBD_HT-SELEX_2 		0.962 0.902
MAFF
M04361_2.00 		Homo sapiens
NYGCTGASTCAGCRN
NYGCTGASTCAGCRN		 SELEX
Yin et al.(2017)
MAFF_FL_HT-SELEX_1 		0.962 0.902
MAFF
M04362_2.00 		Homo sapiens
NYGCTKACGTMAGCAN
NTGCTKACGTMAGCRN		 SELEX
Yin et al.(2017)
MAFF_FL_HT-SELEX_2 		0.962 0.902
MAFF
M08074_2.00 		Homo sapiens
NWWNTGCTGASTCAGCANWWH
DWWNTGCTGASTCAGCANWWN		 ChIP-seq
Mathelier et al.(2014)
MA0495.2 		0.962 0.902
MAFF
M07839_2.00 		Homo sapiens
TGCTGASTCAGCANW
WNTGCTGASTCAGCA		 ChIP-seq
Gerstein et al.(2012)
HepG2_MAFF_Stanford 		0.962 0.902
MAFF
M08808_2.00 		Homo sapiens
NRDDNWGMTRASTCAGCA
TGCTGASTYAKCWNHHYN		 Misc
Kulakovskiy et al.(2013)
MAFF_HUMAN.H11MO.0.B 		0.962 0.902
Maff
M08834_2.00 		Mus musculus
NWHNTGCTGASTCAGCANWYYN
NRRWNTGCTGASTCAGCANDWN		 Misc
Kulakovskiy et al.(2013)
MAFF_MOUSE.H11MO.0.A 		0.962 0.902
MAFF
M10012_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MAFF_02 		0.962 0.902
Maff
M10032_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MAFF_03 		0.962 0.902
MAFF
M10013_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MAFF_04 		0.962 0.902
MAFF
M04359_2.00 		Homo sapiens
NYGCTGASTCAGCRN
NYGCTGASTCAGCRN		 SELEX
Yin et al.(2017)
MAFF_eDBD_Methyl-HT-SELEX_1 		0.962 0.902
MAFF
M04360_2.00 		Homo sapiens
DYGCTKACRTCAGCAN
NTGCTGAYGTMAGCRH		 SELEX
Yin et al.(2017)
MAFF_eDBD_Methyl-HT-SELEX_2 		0.962 0.902
MAFF
M04363_2.00 		Homo sapiens
NYGCTGASTCAGCRN
NYGCTGASTCAGCRN		 SELEX
Yin et al.(2017)
MAFF_FL_Methyl-HT-SELEX_1 		0.962 0.902
MAFF
M04364_2.00 		Homo sapiens
NYGCTGAYGTCAGCRH
DYGCTGACRTCAGCRN		 SELEX
Yin et al.(2017)
MAFF_FL_Methyl-HT-SELEX_2 		0.962 0.902
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004700 bZIP 49 116

Links

Other bZIP family TFs
Other Geospiza fortis TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011585 Calypte anna Aan_R011585 I 0.964
Afo_R007908 Aptenodytes forsteri Afo_R007908 I 0.964
Alligator_sinensis_CCG008027.1 Alligator sinensis Alligator_sinensis_CCG008027.1 I 0.964
Brh_R009272 Buceros rhinoceros Brh_R009272 I 0.964
Cmyd_10007723 Chelonia mydas Cmyd_10007723 I 0.964
MAFF Anolis carolinensis ENSACAG00000008424 I 0.964
ENSAMEG00000010499 Ailuropoda melanoleuca ENSAMEG00000010499 I 0.962
ENSAMXG00000008651 Astyanax mexicanus ENSAMXG00000008651 I 0.827
MAFF Bos taurus ENSBTAG00000021435 I 0.962
ENSBTAP00000028574-D1 Bos grunniens ENSBTAP00000028574-D1 I 0.939
MAFF Canis familiaris ENSCAFG00000029842 I 0.962
MAFF Callithrix jacchus ENSCJAG00000011992 I 0.962
ENSCSAG00000006757 Chlorocebus sabaeus ENSCSAG00000006757 I 0.962
maff Danio rerio ENSDARG00000028957 I 0.827
Maff Dipodomys ordii ENSDORG00000013449 I 0.962
MAFF Echinops telfairi ENSETEG00000012984 I 0.962
ENSFALG00000012611 Ficedula albicollis ENSFALG00000012611 I 0.964
MAFF Homo sapiens ENSG00000185022 D 0.962
mafgb Gasterosteus aculeatus ENSGACG00000019041 I 0.787
ENSGALG00000012277 Gallus gallus ENSGALG00000012277 I 0.964
MAFF Gorilla gorilla ENSGGOG00000021932 I 0.943
ENSLACG00000007109 Latimeria chalumnae ENSLACG00000007109 I 0.790
MAFF Loxodonta africana ENSLAFG00000022547 I 0.962
ENSMEUG00000002984 Macropus eugenii ENSMEUG00000002984 I 0.961
MAFF Meleagris gallopavo ENSMGAG00000015937 I 0.964
ENSMICG00000011572 Microcebus murinus ENSMICG00000011572 I 0.962
MAFF Myotis lucifugus ENSMLUG00000011358 I 0.962
ENSMMUG00000013915 Macaca mulatta ENSMMUG00000013915 I 0.962
ENSMMUP00000018288 Macaca fascicularis ENSMMUP00000018288 I 0.962
MAFF Monodelphis domestica ENSMODG00000018732 I 0.961
ENSMPUG00000013085 Mustela putorius furo ENSMPUG00000013085 I 0.962
Maff Mus musculus ENSMUSG00000042622 D 0.962
ENSNLEG00000015068 Nomascus leucogenys ENSNLEG00000015068 I 0.962
ENSOARG00000015236 Ovis aries ENSOARG00000015236 I 0.798
MAFF Oryctolagus cuniculus ENSOCUG00000006266 I 0.962
MAFF Otolemur garnettii ENSOGAG00000027848 I 0.962
ENSONIG00000001329 Oreochromis niloticus ENSONIG00000001329 I 0.795
ENSONIG00000019674 Oreochromis niloticus ENSONIG00000019674 I 0.827
mafk Oryzias latipes ENSORLG00000004687 I 0.795
MAFG Oryzias latipes ENSORLG00000012170 I 0.864
ENSPANG00000020550 Papio anubis ENSPANG00000020550 I 0.962
MAFF Procavia capensis ENSPCAG00000013370 I 0.962
ENSPFOG00000002983 Poecilia formosa ENSPFOG00000002983 I 0.864
ENSPFOG00000005759 Poecilia formosa ENSPFOG00000005759 I 0.827
ENSPFOG00000012736 Poecilia formosa ENSPFOG00000012736 I 0.795
ENSPPYG00000011816 Pongo abelii ENSPPYG00000011816 I 0.962
MAFF Pan troglodytes ENSPTRG00000029431 I 0.962
MAFK Pteropus vampyrus ENSPVAG00000013872 I 0.792
Maff Rattus norvegicus ENSRNOG00000012886 I 0.962
MAFF Sus scrofa ENSSSCG00000030165 I 0.962
ENSSTOG00000025460 Ictidomys tridecemlineatus ENSSTOG00000025460 I 0.962
MAFF Taeniopygia guttata ENSTGUG00000010431 I 0.964
maff Tetraodon nigroviridis ENSTNIG00000001100 I 0.845
mafk Tetraodon nigroviridis ENSTNIG00000004471 I 0.795
mafk Takifugu rubripes ENSTRUG00000013716 I 0.795
maff Takifugu rubripes ENSTRUG00000016981 I 0.845
MAFF Tursiops truncatus ENSTTRG00000005618 I 0.962
ENSXMAG00000009331 Xiphophorus maculatus ENSXMAG00000009331 I 0.795
ENSXMAG00000012964 Xiphophorus maculatus ENSXMAG00000012964 I 0.864
Ogr11652 Ophisaurus gracilis Ogr11652 I 0.964
Pvit_08359 Pogona vitticeps Pvit_08359 I 0.964