Bo8g027000 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo8g027000 T081775_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.827 1.000
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g027000.1 C2H2 ZF 330 352
Bo8g027000.1 C2H2 ZF 351 382

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP13468 Atta cephalotes ACEP13468 I 0.000
BN946_scf184851.g74 Trametes cinnabarina BN946_scf184851.g74 I 0.000
CAOG_06646 Capsaspora owczarzaki CAOG_06646 I 0.000
cassava18146.valid.m1 Manihot esculenta cassava18146.valid.m1 I 0.000
fgeneshTM_pg.1_#_391 Tremella mesenterica fgeneshTM_pg.1_#_391 N 0.000
GUITHDRAFT_151863 Guillardia theta GUITHDRAFT_151863 N 0.000
GUITHDRAFT_54513 Guillardia theta GUITHDRAFT_54513 N 0.000
GUITHDRAFT_92699 Guillardia theta GUITHDRAFT_92699 N 0.000
K437DRAFT_223158 Tilletiaria anomala K437DRAFT_223158 N 0.000
PAN0_004d2310 Pseudozyma antarctica PAN0_004d2310 I 0.000
Phatr3_J39785 Phaeodactylum tricornutum Phatr3_J39785 N 0.000
PHSY_006379 Pseudozyma hubeiensis PHSY_006379 I 0.000
PIIN_04679 Piriformospora indica PIIN_04679 I 0.000
PILCRDRAFT_30307 Piloderma croceum PILCRDRAFT_30307 N 0.000
PSEUBRA_SCAF4g04935 Pseudozyma brasiliensis PSEUBRA_SCAF4g04935 I 0.000
PTSG_11973 Salpingoeca rosetta PTSG_11973 I 0.000
Pvit_18730 Pogona vitticeps Pvit_18730 I 0.000
sr13476 Sporisorium reilianum sr13476 I 0.000
UHOR_03747 Ustilago hordei UHOR_03747 I 0.000
UM02280 Ustilago maydis UM02280 I 0.000
V565_005010 Rhizoctonia solani V565_005010 N 0.000